Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1965

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10332 and 10333 are separated by 563 nucleotides mRNA_1964: 10332 - K01495 GCH1, folE GTP cyclohydrolase I, at 621,166 to 622,157 10332 mRNA_1965: 10333 - K11422 SETD1, SET1 histone-lysine N-methyltransferase SETD1, at 622,721 to 626,978 10333

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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622,426 + -0.0
622,432 + +0.0
622,583 + -0.0
622,593 + +0.2
622,682 + -0.5
622,714 - +0.1
623,037 + -0.0
623,613 + 10333 mRNA_1965 0.21 -0.4
624,315 - 10333 mRNA_1965 0.37 -0.5
624,577 + 10333 mRNA_1965 0.44 +1.7
624,741 - 10333 mRNA_1965 0.47 +1.8
625,165 - 10333 mRNA_1965 0.57 +0.2
625,750 + 10333 mRNA_1965 0.71 -1.1
625,945 + 10333 mRNA_1965 0.76 +1.3
626,630 - -0.3
626,730 - +0.1
626,779 + -1.8
626,792 - +1.3
627,654 + -0.7
627,670 + +0.3
627,670 + +0.8
627,672 + +0.4
627,809 + +0.3
627,813 + +0.9
627,813 - -0.2
627,819 - +0.4
627,823 - -0.2

Or see this region's nucleotide sequence