Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1970

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10337 and 10338 are separated by 365 nucleotides mRNA_1969: 10337 - K14961 RBBP5, SWD1, CPS50 COMPASS component SWD1, at 635,638 to 637,721 10337 mRNA_1970: 10338 - KOG2614 Kynurenine 3-monooxygenase and related flavoprotein monooxygenases, at 638,087 to 640,268 10338

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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637,606 - +0.0
637,873 - -0.6
637,896 - +1.3
637,905 - +0.5
638,024 - +0.2
638,144 - +1.5
638,189 + +1.0
638,460 + 10338 mRNA_1970 0.17 +0.6
638,461 + 10338 mRNA_1970 0.17 +0.4
638,658 + 10338 mRNA_1970 0.26 -0.2
638,904 - 10338 mRNA_1970 0.37 +0.2
639,463 - 10338 mRNA_1970 0.63 +0.0
639,476 - 10338 mRNA_1970 0.64 +0.6
639,600 - 10338 mRNA_1970 0.69 +0.1
639,603 - 10338 mRNA_1970 0.69 +0.0
639,773 + 10338 mRNA_1970 0.77 +0.2
639,909 + 10338 mRNA_1970 0.84 +0.0
639,926 - 10338 mRNA_1970 0.84 +1.4
640,072 - +0.4
640,202 - +0.5
640,205 - +2.1
640,207 - +0.3
640,222 + +0.1
640,230 + -0.4
640,238 + +0.8
640,242 + -1.3
640,245 + +1.9
640,349 - +0.2
640,369 - +0.7
640,371 - +0.8
640,374 + +1.8
640,377 + +0.4
640,379 + +0.9
640,385 + +0.2
640,423 - +1.2
640,491 - +1.0
640,510 - +0.6
640,534 + -0.1
640,656 - -0.3
640,795 + +1.1
640,832 + +0.5
641,113 + +0.8
641,222 + +0.9
641,241 - -0.8
641,266 + +0.5

Or see this region's nucleotide sequence