Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1989

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10357 and 10358 are separated by 116 nucleotides mRNA_1989: 10357 - KOG0551 Hsp90 co-chaperone CNS1 (contains TPR repeats), at 682,690 to 684,207 10357 mRNA_1990: 10358 - HMMPfam-PPR repeat-PF01535,HMMPfam-Pentatricopeptide repeat domain-PF13812,ProSiteProfiles-Pentatricopeptide (PPR) repeat profile.-PS51375,TIGRFAM-PPR pentatricopeptide repeat domain-TIGR00756, at 684,324 to 686,633 10358

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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681,800 + +0.7
681,822 - +0.1
681,822 - +0.7
681,908 + -0.5
681,952 - +2.1
681,982 + +1.4
681,987 + +0.3
681,989 + +0.5
682,079 - -0.2
682,094 + +0.2
682,104 - +0.9
682,106 - +0.6
682,107 + +0.6
682,121 + -0.1
682,124 + -1.0
682,124 - +0.8
682,148 - -0.4
682,258 + +0.6
682,277 - +0.6
682,280 - +0.5
682,297 - +0.5
682,305 + +0.1
682,313 - +0.4
682,319 + +1.1
682,417 - +0.2
682,418 + +0.1
682,432 + +0.8
682,435 - +0.4
682,441 - +0.7
682,451 + -0.1
682,454 + -0.1
682,459 + +0.3
682,469 + +0.9
682,471 - +0.8
682,473 - -0.1
682,473 - +1.2
682,475 + +0.8
682,476 + -0.2
682,484 - +0.4
682,492 - +0.1
682,493 - +0.3
682,507 - +0.8
682,521 + +0.6
682,585 - -0.2
682,605 - +0.1
682,611 - +0.2
682,612 - +0.1
682,616 - +0.2
682,632 - +0.5
682,642 + -0.2
682,643 - +0.4
682,645 + -1.1
682,647 - +0.2
682,650 - +0.1
682,653 + -0.2
682,659 + -0.9
682,661 - +0.2
682,668 + +0.6
684,248 - -1.0
684,252 - -0.1
684,267 + -0.0
684,274 - +1.2

Or see this region's nucleotide sequence