Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2007

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10374 and 10375 are separated by 238 nucleotides10375 and 10376 are separated by 253 nucleotides mRNA_2006: 10374 - K00380 cysJ sulfite reductase (NADPH) flavoprotein alpha-component, at 724,216 to 728,973 10374 mRNA_2007: 10375 - K15331 TRMT2B, TRM2 tRNA (uracil-5-)-methyltransferase, at 729,212 to 731,398 10375 mRNA_2008: 10376 - K02929 RP-L44e, RPL44 large subunit ribosomal protein L44e, at 731,652 to 732,253 10376

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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728,685 + +0.4
729,222 - +0.2
729,249 + +0.2
729,263 + -0.1
729,315 + +0.3
729,355 - -0.4
729,459 + 10375 mRNA_2007 0.11 +0.6
729,763 + 10375 mRNA_2007 0.25 -0.2
729,888 - 10375 mRNA_2007 0.31 +0.3
730,122 - 10375 mRNA_2007 0.42 +0.7
730,181 + 10375 mRNA_2007 0.44 -0.1
730,322 + 10375 mRNA_2007 0.51 +0.5
730,323 + 10375 mRNA_2007 0.51 +1.0
730,663 + 10375 mRNA_2007 0.66 -2.1
730,898 + 10375 mRNA_2007 0.77 -0.1
731,197 + +1.1
731,252 - +0.1
731,360 + -0.6
731,361 - +0.5
731,404 - -0.5
731,491 - +0.6
731,505 - +0.0
731,515 + +0.9
731,533 + -0.4

Or see this region's nucleotide sequence