Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2066

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10433 and 10434 are separated by 196 nucleotides10434 and 10435 are separated by 379 nucleotides mRNA_2065: 10433 - Hypothetical Protein, at 866,238 to 867,408 10433 mRNA_2066: 10434 - SUPERFAMILY--SSF52047, at 867,605 to 868,583 10434 mRNA_2067: 10435 - BLAST cell morphogenesis protein [Grosmannia clavigera ..., at 868,963 to 869,751 10435

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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866,697 - 10433 mRNA_2065 0.39 +1.0
866,716 - 10433 mRNA_2065 0.41 -0.2
866,868 - 10433 mRNA_2065 0.54 +1.0
866,876 - 10433 mRNA_2065 0.54 +0.3
867,206 - 10433 mRNA_2065 0.83 -0.7
867,288 - 10433 mRNA_2065 0.90 +1.0
867,319 - -0.7
867,385 + +0.4
867,431 - -0.7
867,466 - +1.1
867,479 - +1.1
867,486 + +0.8
867,486 + +0.3
867,488 - -0.2
867,574 - +1.0
867,583 - +0.6
867,596 - +1.3
867,619 + +0.6
867,639 - +1.6
867,944 - 10434 mRNA_2066 0.35 +0.9
867,948 + 10434 mRNA_2066 0.35 +0.8
867,991 - 10434 mRNA_2066 0.39 +0.6
868,059 - 10434 mRNA_2066 0.46 +0.4
868,066 + 10434 mRNA_2066 0.47 -0.5
868,214 + 10434 mRNA_2066 0.62 +1.8
868,253 - 10434 mRNA_2066 0.66 +0.4
868,298 - 10434 mRNA_2066 0.71 +1.2
868,342 - 10434 mRNA_2066 0.75 -0.5
868,390 - 10434 mRNA_2066 0.80 +1.4
868,493 - -1.2
868,501 + +1.5
868,534 + +0.3
868,534 + -1.0
868,555 - +0.1
868,625 - +0.0
868,626 - -1.0
868,645 - +0.3
868,712 - +0.5
868,813 - -0.4
868,875 - +1.5
868,932 - +0.2
868,957 - -1.2
868,974 + +0.6
868,980 - +1.0
868,983 - +1.4
869,027 - -0.4
869,097 + 10435 mRNA_2067 0.17 +0.0
869,174 + 10435 mRNA_2067 0.27 +0.3
869,210 - 10435 mRNA_2067 0.31 -0.3
869,232 + 10435 mRNA_2067 0.34 +0.1
869,239 - 10435 mRNA_2067 0.35 -0.5
869,248 - 10435 mRNA_2067 0.36 -0.2
869,360 - 10435 mRNA_2067 0.50 +1.2
869,379 - 10435 mRNA_2067 0.53 +0.4
869,379 - 10435 mRNA_2067 0.53 -0.5
869,385 + 10435 mRNA_2067 0.53 +1.2
869,405 - 10435 mRNA_2067 0.56 +1.0
869,405 - 10435 mRNA_2067 0.56 +1.1
869,406 + 10435 mRNA_2067 0.56 +0.7
869,493 - 10435 mRNA_2067 0.67 +0.3
869,524 - 10435 mRNA_2067 0.71 -0.3
869,540 - 10435 mRNA_2067 0.73 +0.1

Or see this region's nucleotide sequence