Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2077

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10444 and 10445 are separated by 360 nucleotides10445 and 10446 are separated by 237 nucleotides mRNA_2076: 10444 - K15073 UFO1 ubiquitin ligase complex F-box protein UFO1, at 14,987 to 18,739 10444 mRNA_2077: 10445 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 19,100 to 20,228 10445 mRNA_2078: 10446 - K10773 NTH endonuclease III, at 20,466 to 22,211 10446

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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18,192 - 10444 mRNA_2076 0.85 -0.0
18,548 + +0.1
18,639 + -0.2
18,742 - -0.4
18,860 + +1.2
18,863 - -0.0
18,878 - -0.5
19,094 + -1.2
19,127 - +0.9
19,187 - +0.5
19,313 - 10445 mRNA_2077 0.19 +0.4
19,326 - 10445 mRNA_2077 0.20 -0.1
19,482 - 10445 mRNA_2077 0.34 +0.7
19,649 - 10445 mRNA_2077 0.49 +0.3
19,663 + 10445 mRNA_2077 0.50 +0.6
19,676 - 10445 mRNA_2077 0.51 +0.6
19,761 + 10445 mRNA_2077 0.59 -0.1
19,762 + 10445 mRNA_2077 0.59 +0.2
19,949 - 10445 mRNA_2077 0.75 +1.3
20,094 - 10445 mRNA_2077 0.88 -0.9
20,094 - 10445 mRNA_2077 0.88 +0.1
20,100 + 10445 mRNA_2077 0.89 -0.9
20,100 + 10445 mRNA_2077 0.89 +0.2
20,306 + -0.1
20,419 + +0.7
20,794 - 10446 mRNA_2078 0.19 -0.5
20,866 - 10446 mRNA_2078 0.23 -0.0
21,016 - 10446 mRNA_2078 0.32 +0.3
21,051 + 10446 mRNA_2078 0.34 +1.1
21,120 - 10446 mRNA_2078 0.37 +0.9
21,148 - 10446 mRNA_2078 0.39 -0.0

Or see this region's nucleotide sequence