Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2088

Experiment: 40 hrs Median Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10455 and 10456 are separated by 694 nucleotides10456 and 10457 are separated by 211 nucleotides mRNA_2087: 10455 - K19792 FET4 low-affinity ferrous iron transport protein, at 41,484 to 43,178 10455 mRNA_2088: 10456 - K11539 CBR4 carbonyl reductase 4, at 43,873 to 45,155 10456 mRNA_2089: 10457 - KOG0637 Sucrose transporter and related proteins, at 45,367 to 47,923 10457

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
remove
43,191 + +2.1
43,353 - +0.5
43,451 - +1.2
43,484 - +0.2
43,487 - +1.6
43,489 + +0.7
43,494 + -0.1
43,498 + -0.2
43,566 - +0.2
43,590 - +0.5
43,602 - -0.2
43,639 - +1.1
43,744 - +0.8
43,752 + +0.0
43,770 + +1.5
43,770 + +1.1
43,770 + -0.5
43,787 + -0.6
43,796 + +1.5
43,898 - -0.5
43,916 - +0.1
43,941 + +0.3
44,014 - 10456 mRNA_2088 0.11 +0.3
44,320 - 10456 mRNA_2088 0.35 +0.5
44,473 - 10456 mRNA_2088 0.47 -1.4
44,507 + 10456 mRNA_2088 0.49 -0.0
44,802 + 10456 mRNA_2088 0.72 +1.3
44,818 - 10456 mRNA_2088 0.74 -0.4
44,901 - 10456 mRNA_2088 0.80 +0.1
44,914 - 10456 mRNA_2088 0.81 +1.3
44,934 - 10456 mRNA_2088 0.83 +0.3
45,139 + +0.8
45,258 + -0.7
45,335 + -0.1
45,387 - -0.7
45,825 + 10457 mRNA_2089 0.18 +0.2
45,956 + 10457 mRNA_2089 0.23 +0.1
46,101 - 10457 mRNA_2089 0.29 -0.5

Or see this region's nucleotide sequence