Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2120

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10487 and 10488 are separated by 697 nucleotides10488 and 10489 are separated by 483 nucleotides mRNA_2119: 10487 - HMMPfam-Taurine catabolism dioxygenase TauD, TfdA family-PF02668,SUPERFAMILY--SSF51197, at 117,592 to 119,082 10487 mRNA_2120: 10488 - Hypothetical Protein, at 119,780 to 121,101 10488 mRNA_2121: 10489 - K17991 PXG peroxygenase, at 121,585 to 123,428 10489

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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118,836 - 10487 mRNA_2119 0.83 +0.4
118,938 - +1.1
119,571 + +0.5
120,046 + 10488 mRNA_2120 0.20 -0.8
120,363 + 10488 mRNA_2120 0.44 +1.0
120,475 + 10488 mRNA_2120 0.53 -0.2
120,484 - 10488 mRNA_2120 0.53 +0.5
120,484 + 10488 mRNA_2120 0.53 +1.2
120,497 + 10488 mRNA_2120 0.54 +0.5
120,514 - 10488 mRNA_2120 0.56 +2.3
120,636 - 10488 mRNA_2120 0.65 -0.1
120,766 + 10488 mRNA_2120 0.75 +0.3
120,781 - 10488 mRNA_2120 0.76 -0.1
120,785 - 10488 mRNA_2120 0.76 +0.5
120,786 + 10488 mRNA_2120 0.76 +0.3
120,790 + 10488 mRNA_2120 0.76 +0.6
120,795 - 10488 mRNA_2120 0.77 +0.5
120,798 - 10488 mRNA_2120 0.77 -0.0
120,798 + 10488 mRNA_2120 0.77 +0.3
120,799 - 10488 mRNA_2120 0.77 +0.2
120,799 - 10488 mRNA_2120 0.77 -1.1
120,803 + 10488 mRNA_2120 0.77 -0.3
120,805 - 10488 mRNA_2120 0.78 -0.1
120,806 + 10488 mRNA_2120 0.78 +0.3
120,807 - 10488 mRNA_2120 0.78 +1.2
120,808 + 10488 mRNA_2120 0.78 +1.9
120,810 + 10488 mRNA_2120 0.78 +1.3
121,088 + +1.2
121,091 + +1.0
121,202 + +1.3
121,231 - +0.1
121,238 + +0.1
121,263 + +0.9
121,354 + +1.5
121,555 - -0.8
121,676 + +1.0
121,686 + +0.9
121,708 - -0.0
121,714 - -1.3
121,835 - 10489 mRNA_2121 0.14 +0.4
121,982 + 10489 mRNA_2121 0.22 +0.3

Or see this region's nucleotide sequence