Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2121

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10488 and 10489 are separated by 483 nucleotides mRNA_2120: 10488 - Hypothetical Protein, at 119,780 to 121,101 10488 mRNA_2121: 10489 - K17991 PXG peroxygenase, at 121,585 to 123,428 10489

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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120,636 - 10488 mRNA_2120 0.65 -0.1
120,766 + 10488 mRNA_2120 0.75 +0.3
120,781 - 10488 mRNA_2120 0.76 -0.1
120,785 - 10488 mRNA_2120 0.76 +0.5
120,786 + 10488 mRNA_2120 0.76 +0.3
120,790 + 10488 mRNA_2120 0.76 +0.6
120,795 - 10488 mRNA_2120 0.77 +0.5
120,798 - 10488 mRNA_2120 0.77 -0.0
120,798 + 10488 mRNA_2120 0.77 +0.3
120,799 - 10488 mRNA_2120 0.77 +0.2
120,799 - 10488 mRNA_2120 0.77 -1.1
120,803 + 10488 mRNA_2120 0.77 -0.3
120,805 - 10488 mRNA_2120 0.78 -0.1
120,806 + 10488 mRNA_2120 0.78 +0.3
120,807 - 10488 mRNA_2120 0.78 +1.2
120,808 + 10488 mRNA_2120 0.78 +1.9
120,810 + 10488 mRNA_2120 0.78 +1.3
121,088 + +1.2
121,091 + +1.0
121,202 + +1.3
121,231 - +0.1
121,238 + +0.1
121,263 + +0.9
121,354 + +1.5
121,555 - -0.8
121,676 + +1.0
121,686 + +0.9
121,708 - -0.0
121,714 - -1.3
121,835 - 10489 mRNA_2121 0.14 +0.4
121,982 + 10489 mRNA_2121 0.22 +0.3
122,132 - 10489 mRNA_2121 0.30 +2.1
122,136 - 10489 mRNA_2121 0.30 +1.0
122,139 - 10489 mRNA_2121 0.30 +0.7
122,316 + 10489 mRNA_2121 0.40 +0.2
123,150 + 10489 mRNA_2121 0.85 -0.5
123,150 + 10489 mRNA_2121 0.85 +0.3
123,300 + -1.7
123,314 - +0.2
123,321 + +1.0
123,328 - -0.3
123,328 - +0.0
123,334 - +0.6
123,457 + +0.9
123,468 - +1.0
123,475 + +1.4
123,477 - -0.6
123,484 + +0.3
123,485 - +0.1
123,486 - -1.5
123,490 - -0.4
123,491 + +0.3
123,493 + +0.2
123,502 - +0.4
123,507 + -1.3
123,522 - +0.3
123,528 - +0.7
123,540 + -1.2
123,540 - -0.4
123,682 - +0.6
123,717 - +0.2
124,108 + +0.4
124,117 - +1.1
124,255 + -0.2
124,265 + +0.0
124,279 - -0.6
124,381 + +0.4
124,390 + -0.2
124,393 - -0.1
124,414 + +0.4
124,417 - -0.2
124,419 + +0.2
124,421 + +1.2
124,422 + +0.1
124,423 + +0.1

Or see this region's nucleotide sequence