Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2136

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10503 and 10504 are separated by 287 nucleotides10504 and 10505 are separated by 656 nucleotides mRNA_2135: 10503 - KOG2922 Uncharacterized conserved protein, at 150,841 to 152,742 10503 mRNA_2136: 10504 - K01613 psd, PISD phosphatidylserine decarboxylase, at 153,030 to 154,707 10504 mRNA_2137: 10505 - Hypothetical Protein, at 155,364 to 157,707 10505

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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152,197 + 10503 mRNA_2135 0.71 -0.1
152,238 - 10503 mRNA_2135 0.73 +1.2
152,282 + 10503 mRNA_2135 0.76 -0.2
152,360 - 10503 mRNA_2135 0.80 +1.3
152,650 + -0.2
152,654 - -0.1
152,664 - -0.2
152,690 - +0.6
152,693 + +0.7
152,700 + -0.2
152,764 + +0.0
152,808 - +0.2
153,117 - +1.3
153,269 + 10504 mRNA_2136 0.14 +0.2
153,307 - 10504 mRNA_2136 0.17 +0.4
153,666 - 10504 mRNA_2136 0.38 +0.5
153,673 - 10504 mRNA_2136 0.38 -0.2
153,721 - 10504 mRNA_2136 0.41 +0.3
153,826 - 10504 mRNA_2136 0.47 -0.1
153,833 + 10504 mRNA_2136 0.48 +0.1
153,845 + 10504 mRNA_2136 0.49 -0.2
153,859 - 10504 mRNA_2136 0.49 +0.7
153,866 + 10504 mRNA_2136 0.50 -0.7
153,866 + 10504 mRNA_2136 0.50 +1.3
153,867 + 10504 mRNA_2136 0.50 -0.5
153,966 - 10504 mRNA_2136 0.56 +1.5
153,984 - 10504 mRNA_2136 0.57 +1.5
154,391 - 10504 mRNA_2136 0.81 +0.6
154,446 - 10504 mRNA_2136 0.84 +1.1
154,688 - +0.8
154,839 - +0.4
155,435 + +1.9
155,436 - -0.0
155,442 + -0.2
155,451 - -0.2
155,562 - +0.0

Or see this region's nucleotide sequence