Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2139

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10506 and 10507 are separated by 275 nucleotides10507 and 10508 are separated by 441 nucleotides mRNA_2138: 10506 - HMMPfam-Putative stress-responsive nuclear envelope protein-PF10281, at 157,835 to 161,101 10506 mRNA_2139: 10507 - K09377 CSRP cysteine and glycine-rich protein, at 161,377 to 162,483 10507 mRNA_2140: 10508 - HMMPfam-F-box domain-PF00646,HMMPfam-Domain of unknown function (DUF1708)-PF08101,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF48350,SUPERFAMILY--SSF81383, at 162,925 to 174,925 10508

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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160,406 + 10506 mRNA_2138 0.79 -0.2
160,626 - 10506 mRNA_2138 0.85 +0.0
160,658 - 10506 mRNA_2138 0.86 -1.1
160,813 + +1.1
160,851 - -0.3
160,918 + +1.8
161,077 + +0.5
161,109 + +1.0
161,200 - +1.5
161,263 + -0.2
161,273 + +0.8
161,275 - +0.6
161,490 - 10507 mRNA_2139 0.10 +0.7
161,638 + 10507 mRNA_2139 0.24 +1.5
161,736 + 10507 mRNA_2139 0.32 +0.1
161,795 - 10507 mRNA_2139 0.38 -0.1
162,252 - 10507 mRNA_2139 0.79 +0.6
162,338 - 10507 mRNA_2139 0.87 +0.8
162,894 - +1.4
163,472 + +0.0

Or see this region's nucleotide sequence