Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2224

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10591 and 10592 are separated by 291 nucleotides10592 and 10593 are separated by 606 nucleotides mRNA_2223: 10591 - Hypothetical Protein, at 398,551 to 400,277 10591 mRNA_2224: 10592 - KOG2653 6-phosphogluconate dehydrogenase, at 400,569 to 403,367 10592 mRNA_2225: 10593 - Hypothetical Protein, at 403,974 to 404,899 10593

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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399,666 - 10591 mRNA_2223 0.65 +1.2
399,668 + 10591 mRNA_2223 0.65 +0.5
399,677 + 10591 mRNA_2223 0.65 -0.8
399,709 - 10591 mRNA_2223 0.67 +0.2
399,818 - 10591 mRNA_2223 0.73 -0.9
399,946 - 10591 mRNA_2223 0.81 -0.0
400,269 - +0.9
400,418 + +0.3
400,568 + -1.4
400,741 - +1.0
400,819 + +0.4
400,863 + 10592 mRNA_2224 0.11 +0.3
400,958 - 10592 mRNA_2224 0.14 +0.4
400,973 + 10592 mRNA_2224 0.14 +0.3
400,986 + 10592 mRNA_2224 0.15 +0.7
401,003 - 10592 mRNA_2224 0.16 +0.5
401,125 - 10592 mRNA_2224 0.20 +0.7
401,137 + 10592 mRNA_2224 0.20 +0.3
401,141 - 10592 mRNA_2224 0.20 +1.7
401,141 - 10592 mRNA_2224 0.20 -0.3
401,209 - 10592 mRNA_2224 0.23 +0.5
401,289 + 10592 mRNA_2224 0.26 -0.0
401,290 + 10592 mRNA_2224 0.26 +1.9
401,293 + 10592 mRNA_2224 0.26 -0.1
401,303 + 10592 mRNA_2224 0.26 -0.4
401,437 - 10592 mRNA_2224 0.31 -0.7
401,464 - 10592 mRNA_2224 0.32 +0.3
401,587 - 10592 mRNA_2224 0.36 -0.5
401,612 + 10592 mRNA_2224 0.37 +2.0
401,884 + 10592 mRNA_2224 0.47 +0.3
402,216 + 10592 mRNA_2224 0.59 +0.7
402,425 + 10592 mRNA_2224 0.66 +0.3
402,591 + 10592 mRNA_2224 0.72 +0.9
402,855 - 10592 mRNA_2224 0.82 -0.5
403,168 + -0.4
403,550 - +0.3
403,574 - -0.4
403,613 - -1.1
403,709 + +0.0
403,735 + +0.3
403,736 + +0.5
403,740 + +0.6
403,743 - -1.1
403,746 + -0.3
403,753 + +0.3
403,780 - +1.0
403,843 - +0.0
403,870 + +1.1
403,870 - +0.7
403,873 - -0.1
403,876 - +0.1
403,880 - +0.0
403,900 + +1.4
403,906 + +0.8
403,908 + +1.6
403,909 + +1.0
403,911 + -0.3
403,920 - +0.7
403,922 - +0.0
403,925 + +1.0
404,054 + +0.3
404,075 - 10593 mRNA_2225 0.11 +0.1
404,088 + 10593 mRNA_2225 0.12 +0.7
404,093 + 10593 mRNA_2225 0.13 +0.6
404,197 - 10593 mRNA_2225 0.24 +0.3
404,221 + 10593 mRNA_2225 0.27 -0.1
404,223 - 10593 mRNA_2225 0.27 -0.2
404,223 - 10593 mRNA_2225 0.27 -0.4
404,339 - 10593 mRNA_2225 0.39 +0.2

Or see this region's nucleotide sequence