Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2287

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10654 and 10655 are separated by 943 nucleotides mRNA_2286: 10654 - Hypothetical Protein, at 528,229 to 530,268 10654 mRNA_2287: 10655 - KOG3870 Uncharacterized conserved protein, at 531,212 to 533,990 10655

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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530,363 - -0.2
530,368 - -0.4
530,372 + -0.6
530,391 + +0.1
530,486 - +0.5
530,562 - +0.2
530,575 + +0.1
530,592 - +1.1
530,601 + +0.3
530,610 + +0.8
530,613 - -0.5
530,639 - +1.3
530,639 + +2.1
530,652 + +0.8
530,678 + +0.1
530,684 + +1.4
530,708 + +0.3
530,714 + +0.3
530,714 + +0.1
530,726 - +0.9
530,727 - +0.2
530,727 + +0.3
530,728 + +1.7
530,771 - +0.1
530,824 - +0.9
530,835 + -0.1
530,840 - +0.7
530,898 + -0.3
530,899 - -0.1
530,900 - +0.1
530,900 - +0.4
530,904 + +0.0
530,904 + -1.2
530,904 - +0.3
530,905 + -0.9
530,911 - +0.3
530,914 + +1.3
530,923 + +0.9
530,923 - +0.1
530,923 + +0.6
530,923 - -1.0
530,928 - +1.8
530,929 + -1.6
530,929 + +0.5
530,930 + -0.9
530,932 - +0.6
530,933 + +1.1
530,934 - +0.8
530,939 - +0.8
530,944 + +0.2
530,945 + +0.4
530,945 + +0.7
530,952 - -0.2
530,958 + +0.0
530,959 + +0.7
530,961 - -0.1
530,967 + +0.7
531,036 + +0.2
531,059 - +0.9
531,061 + -0.2
531,070 - +2.0
531,097 + +0.2
531,101 - -0.7
531,109 + +0.2
531,117 + -0.0
531,117 - +0.3
531,121 + +0.1
531,126 + -0.4
531,129 + -0.1
531,132 + -0.5
531,199 - +1.1
531,261 + +0.5
531,264 - +1.3
531,274 + +0.1
531,280 + -0.0
531,411 - +0.4
531,418 - -1.7
531,420 - -0.4
531,446 + +0.2
532,015 + 10655 mRNA_2287 0.29 +0.7
532,026 - 10655 mRNA_2287 0.29 -0.2
532,430 + 10655 mRNA_2287 0.44 +0.9
532,434 + 10655 mRNA_2287 0.44 +0.9
532,462 - 10655 mRNA_2287 0.45 -0.7
532,590 - 10655 mRNA_2287 0.50 +0.5
532,760 - 10655 mRNA_2287 0.56 +0.1
532,878 + 10655 mRNA_2287 0.60 -0.2
533,307 + 10655 mRNA_2287 0.75 -0.9
533,727 + -0.5
533,733 + +0.5
533,734 - +0.2
533,891 - +0.0
534,036 + +2.3
534,784 + +1.9

Or see this region's nucleotide sequence