Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2312

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10679 and 10680 are separated by 389 nucleotides10680 and 10681 are separated by 167 nucleotides mRNA_2311: 10679 - K20195 MON1 vacuolar fusion protein MON1, at 580,011 to 582,871 10679 mRNA_2312: 10680 - K00275 pdxH, PNPO pyridoxamine 5'-phosphate oxidase, at 583,261 to 584,055 10680 mRNA_2313: 10681 - K13343 PEX14 peroxin-14, at 584,223 to 585,492 10681

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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582,487 + 10679 mRNA_2311 0.87 +1.0
582,620 - +0.5
582,789 - -1.4
582,874 + -0.6
582,918 - -0.1
582,925 - +0.4
582,928 + +0.5
582,954 + +0.3
582,954 + -0.2
583,096 - +0.3
583,115 + +0.5
583,118 - +0.4
584,130 - +0.6
584,210 - +0.5

Or see this region's nucleotide sequence