Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2322

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10689 and 10690 are separated by 168 nucleotides mRNA_2321: 10689 - K14807 DDX51, DBP6 ATP-dependent RNA helicase DDX51/DBP6, at 604,206 to 606,574 10689 mRNA_2322: 10690 - Hypothetical Protein, at 606,743 to 609,720 10690

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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606,669 + +0.7
607,269 + 10690 mRNA_2322 0.18 +0.4
607,390 - 10690 mRNA_2322 0.22 +0.2
607,497 - 10690 mRNA_2322 0.25 +0.2
607,957 - 10690 mRNA_2322 0.41 +1.0
607,978 + 10690 mRNA_2322 0.41 +0.1
608,215 - 10690 mRNA_2322 0.49 +0.9
608,541 + 10690 mRNA_2322 0.60 -0.9
608,600 - 10690 mRNA_2322 0.62 -0.4
608,660 - 10690 mRNA_2322 0.64 +0.7
608,685 - 10690 mRNA_2322 0.65 +0.6
608,997 - 10690 mRNA_2322 0.76 +0.1
609,180 - 10690 mRNA_2322 0.82 +0.3
609,309 - 10690 mRNA_2322 0.86 +0.2
609,315 + 10690 mRNA_2322 0.86 +0.3
609,603 - +1.2
609,651 - +0.4
609,729 - +1.4
609,750 + +1.1
609,763 + +1.5
609,763 + -0.1
609,770 + -0.7
609,860 - -0.2
609,874 - +0.7
609,890 - +0.6
609,897 - -0.1
609,899 + -0.2
609,916 + +1.3
609,918 + +0.8
610,012 + -0.5
610,026 + +0.2
610,036 - -0.7
610,042 - +1.0
610,043 + -0.2
610,045 - +1.2
610,045 - -0.1
610,046 + -1.0
610,075 + -0.3
610,087 + +0.5
610,087 - +0.7
610,091 + +1.3
610,095 + +1.1
610,096 + +1.3
610,097 - -0.3
610,100 + +0.5
610,103 - -1.5
610,104 - +0.7
610,106 - +0.0
610,107 + +1.0
610,111 - -0.2
610,114 + +1.0
610,114 - +0.8
610,117 - +1.5
610,120 + +0.3
610,120 - +1.7
610,122 + +0.8
610,126 + -0.5
610,129 - +0.0
610,129 + -0.9
610,129 + +0.5
610,129 + +0.3
610,135 + +0.2
610,141 - +0.2
610,144 + +0.2
610,146 + +0.5
610,149 + +0.8
610,149 + +0.1
610,153 + -0.5
610,154 - +0.6
610,169 - +0.6
610,181 - +0.4
610,182 - +0.9
610,185 - -0.3
610,187 - +0.6
610,188 - +0.0
610,190 - -0.5
610,190 - +0.4
610,194 - -0.2
610,194 + +0.7
610,208 - +0.5
610,216 + +0.2
610,245 - +0.3
610,257 + -0.7
610,301 - +0.9
610,311 + -0.9
610,315 - -0.8
610,323 - +1.4
610,356 + +0.4
610,365 - -0.4
610,385 - +0.4
610,415 - +1.1
610,439 - -1.3
610,460 - +0.6
610,466 - +0.1
610,467 - -0.0
610,477 - -0.0
610,477 - -0.2
610,489 + -1.3
610,506 + +0.5
610,518 - +0.2
610,537 - +0.3
610,558 - +0.9
610,589 - -0.3
610,606 + +0.1
610,610 - -1.0
610,650 + -0.2

Or see this region's nucleotide sequence