Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2362

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10730 and 10731 are separated by 392 nucleotides mRNA_2362: 10730 - HMMPfam-Pentatricopeptide repeat domain-PF13812, at 706,631 to 709,566 10730 mRNA_2363: 10731 - KOG0017 FOG Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations, at 709,959 to 711,160 10731

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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706,094 - +0.8
706,252 - +0.1
706,285 - -0.2
706,540 - -0.1
706,542 - -0.3
709,996 - -0.1
710,351 + 10731 mRNA_2363 0.33 +0.4
710,460 - 10731 mRNA_2363 0.42 +1.3

Or see this region's nucleotide sequence