Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2399

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10766 and 10767 are separated by 229 nucleotides10767 and 10768 are separated by 273 nucleotides mRNA_2398: 10766 - SUPERFAMILY--SSF52047, at 24,008 to 25,280 10766 mRNA_2399: 10767 - Hypothetical Protein, at 25,510 to 29,581 10767 mRNA_2400: 10768 - Hypothetical Protein, at 29,855 to 31,003 10768

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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24,579 - 10766 mRNA_2398 0.45 +0.8
24,581 - 10766 mRNA_2398 0.45 +1.3
24,720 - 10766 mRNA_2398 0.56 +0.3
24,750 + 10766 mRNA_2398 0.58 +0.7
24,773 + 10766 mRNA_2398 0.60 +1.6
24,856 - 10766 mRNA_2398 0.67 +0.0
24,895 + 10766 mRNA_2398 0.70 +0.9
24,895 + 10766 mRNA_2398 0.70 -0.7
25,005 - 10766 mRNA_2398 0.78 +0.2
25,028 + 10766 mRNA_2398 0.80 -0.3
25,164 + +2.3
25,306 + +0.4
25,422 + -0.4
25,454 - +0.3
25,493 - +0.2
25,693 + +0.2
25,696 - +0.3
25,750 - +0.7
25,857 + +1.1
26,023 + 10767 mRNA_2399 0.13 +1.4
26,450 - 10767 mRNA_2399 0.23 +0.7
26,489 + 10767 mRNA_2399 0.24 -0.3
26,591 - 10767 mRNA_2399 0.27 +0.8
26,591 - 10767 mRNA_2399 0.27 +1.3
26,617 - 10767 mRNA_2399 0.27 -0.9
26,824 - 10767 mRNA_2399 0.32 +0.3
26,824 - 10767 mRNA_2399 0.32 +0.2
26,863 + 10767 mRNA_2399 0.33 +0.4
26,971 + 10767 mRNA_2399 0.36 -0.2
27,089 + 10767 mRNA_2399 0.39 +0.5
27,130 - 10767 mRNA_2399 0.40 +0.2
27,598 - 10767 mRNA_2399 0.51 +0.2
27,674 - 10767 mRNA_2399 0.53 +0.5
27,819 + 10767 mRNA_2399 0.57 +0.0
27,823 - 10767 mRNA_2399 0.57 +1.2
27,849 + 10767 mRNA_2399 0.57 +0.1
27,934 - 10767 mRNA_2399 0.60 -1.2
27,943 + 10767 mRNA_2399 0.60 -0.2
27,946 - 10767 mRNA_2399 0.60 +0.3
27,947 + 10767 mRNA_2399 0.60 +0.7
28,024 - 10767 mRNA_2399 0.62 -0.0
28,030 + 10767 mRNA_2399 0.62 +0.3
28,161 - 10767 mRNA_2399 0.65 +0.1
28,542 + 10767 mRNA_2399 0.74 -0.4
28,759 + 10767 mRNA_2399 0.80 -0.2
29,022 + 10767 mRNA_2399 0.86 -0.3
29,148 - 10767 mRNA_2399 0.89 +0.3
29,148 - 10767 mRNA_2399 0.89 +0.4
29,162 + 10767 mRNA_2399 0.90 -0.1
29,205 + -0.3
29,207 + +0.3
29,243 - +1.4
29,343 - +0.0
29,558 - +0.6
29,638 + -0.8
29,638 + +0.2
29,743 + -0.3
29,920 + -0.2
29,921 + +0.3
29,995 - 10768 mRNA_2400 0.12 +0.8
29,997 + 10768 mRNA_2400 0.12 +0.6
30,089 - 10768 mRNA_2400 0.20 -0.3
30,104 + 10768 mRNA_2400 0.22 +0.8
30,125 + 10768 mRNA_2400 0.23 -0.7
30,209 - 10768 mRNA_2400 0.31 +0.2
30,209 - 10768 mRNA_2400 0.31 -0.2
30,216 - 10768 mRNA_2400 0.31 -0.2
30,222 - 10768 mRNA_2400 0.32 +0.9
30,278 + 10768 mRNA_2400 0.37 +0.1
30,460 + 10768 mRNA_2400 0.53 -0.2
30,504 - 10768 mRNA_2400 0.56 +0.4
30,522 + 10768 mRNA_2400 0.58 +0.9
30,534 - 10768 mRNA_2400 0.59 -0.9
30,571 - 10768 mRNA_2400 0.62 +0.2

Or see this region's nucleotide sequence