Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2427

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10794 and 10795 are separated by 549 nucleotides10795 and 10796 are separated by 64 nucleotides mRNA_2426: 10794 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 92,965 to 95,698 10794 mRNA_2427: 10795 - Hypothetical Protein, at 96,248 to 96,907 10795 mRNA_2428: 10796 - KOG0583 Serine/threonine protein kinase, at 96,972 to 102,025 10796

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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95,274 - 10794 mRNA_2426 0.84 +0.1
95,336 - 10794 mRNA_2426 0.87 -0.2
95,671 - +0.5
95,787 - +1.7
95,806 + +0.9
95,828 + +0.6
95,971 - +0.7
95,971 + +1.3
96,107 + +0.8
96,148 - -0.2
96,152 - +1.0
96,247 - +2.4
96,267 - -0.8
96,272 + +2.2
96,278 + -0.5
96,280 - +0.5
96,286 - -0.5
96,299 - +1.5
96,308 - +0.0
96,317 - 10795 mRNA_2427 0.10 +0.4
96,328 + 10795 mRNA_2427 0.12 +1.6
96,412 + 10795 mRNA_2427 0.25 +0.2
96,423 - 10795 mRNA_2427 0.27 +2.2
96,453 + 10795 mRNA_2427 0.31 +0.0
96,513 - 10795 mRNA_2427 0.40 +0.4
96,535 + 10795 mRNA_2427 0.43 +0.2
96,543 - 10795 mRNA_2427 0.45 -0.0
96,547 - 10795 mRNA_2427 0.45 -0.2
96,548 + 10795 mRNA_2427 0.45 -0.4
96,566 + 10795 mRNA_2427 0.48 +0.2
96,575 + 10795 mRNA_2427 0.50 +0.1
96,583 - 10795 mRNA_2427 0.51 +0.8
96,583 + 10795 mRNA_2427 0.51 -0.0
96,584 + 10795 mRNA_2427 0.51 +0.5
96,586 + 10795 mRNA_2427 0.51 +0.2
96,634 + 10795 mRNA_2427 0.58 +0.2
96,691 - 10795 mRNA_2427 0.67 +0.4
96,705 + 10795 mRNA_2427 0.69 -0.7
96,709 + 10795 mRNA_2427 0.70 +0.7
96,809 + 10795 mRNA_2427 0.85 +0.3
96,855 - -0.7
96,859 + +0.7
96,861 + -0.1
96,874 + +2.3
97,057 + +2.2
97,128 + +0.1
97,276 - +1.2
97,621 + 10796 mRNA_2428 0.13 +0.8
97,711 + 10796 mRNA_2428 0.15 -0.1
97,769 - 10796 mRNA_2428 0.16 +0.3
97,770 + 10796 mRNA_2428 0.16 -0.5
97,849 - 10796 mRNA_2428 0.17 +1.6

Or see this region's nucleotide sequence