Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2442

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10809 and 10810 are separated by 415 nucleotides10810 and 10811 are separated by 538 nucleotides mRNA_2441: 10809 - KOG1284 Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase, at 138,011 to 140,441 10809 mRNA_2442: 10810 - HMMPfam-ACT domain-PF13840,SUPERFAMILY--SSF55021, at 140,857 to 142,808 10810 mRNA_2443: 10811 - HMMPfam-Peroxidase-PF00141,PRINTS-Haem peroxidase superfamily signature-PR00458,PRINTS-Plant ascorbate peroxidase signature-PR00459,ProSitePatterns-Peroxidases proximal heme-ligand signature.-PS00435,ProSitePatterns-Peroxidases active site signature.-PS00436,ProSiteProfiles-Plant heme peroxidase family profile.-PS50873,SUPERFAMILY--SSF48113, at 143,347 to 145,508 10811

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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140,039 - 10809 mRNA_2441 0.83 -1.0
140,190 - 10809 mRNA_2441 0.90 -1.5
140,214 + +0.4
140,317 - +0.9
140,389 + +0.2
140,551 - +0.3
140,556 + +0.5
140,584 - +0.6
140,625 - +2.0
140,659 - +0.1
140,659 + +0.5
140,663 + -0.4
140,664 + +0.2
140,670 - +0.5
140,679 - +0.2
140,697 + -0.1
140,729 - +0.1
140,729 - +0.1
140,729 - -1.0
140,730 - +0.7
140,735 - +0.4
140,752 + +0.4
140,752 - +1.3
140,781 - +0.7
140,787 + -0.1
140,827 - +0.6
140,955 - +0.7
141,013 + +0.6
141,694 - 10810 mRNA_2442 0.43 +1.3
142,122 + 10810 mRNA_2442 0.65 -0.4
142,244 - 10810 mRNA_2442 0.71 -0.3
142,246 + 10810 mRNA_2442 0.71 +0.5
142,425 - 10810 mRNA_2442 0.80 +1.5
142,500 + 10810 mRNA_2442 0.84 -0.3
142,504 - 10810 mRNA_2442 0.84 +0.7
142,670 - +0.2
142,680 + +0.2
142,802 - +1.0
142,810 - -0.0
142,819 + -0.1
142,825 + +0.6
142,832 + +1.5
142,847 + -0.4
142,926 + +0.3
143,001 - -0.0
143,140 - +1.2
143,140 + -0.0
143,140 - +0.2
143,140 - -0.5
143,144 - +0.2
143,146 + +1.2
143,147 + +0.9
143,150 + +0.1
143,151 - +0.9
143,164 - +1.0
143,167 + +0.4
143,266 + -0.9
143,279 + +0.1
143,284 - -0.0
143,294 + -0.7
143,299 - -0.5
143,302 + -0.2
143,413 - +0.2
143,440 + +0.2
143,578 + 10811 mRNA_2443 0.11 +0.4
143,578 + 10811 mRNA_2443 0.11 +0.6
143,597 - 10811 mRNA_2443 0.12 +1.0
143,755 - 10811 mRNA_2443 0.19 +0.8
143,762 + 10811 mRNA_2443 0.19 +1.3

Or see this region's nucleotide sequence