Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2457

Experiment: 40 hrs Median Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_2457: 10825 - K10589 UBE3C ubiquitin-protein ligase E3 C, at 177,733 to 180,454 10825

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
remove
176,771 - -0.4
176,777 + +0.1
176,809 + +1.1
176,945 + +0.4
177,580 - +1.1
178,532 + 10825 mRNA_2457 0.29 +2.0
179,128 + 10825 mRNA_2457 0.51 +1.0
179,286 - 10825 mRNA_2457 0.57 -0.6
179,342 - 10825 mRNA_2457 0.59 -0.2
179,432 + 10825 mRNA_2457 0.62 +1.4
179,437 - 10825 mRNA_2457 0.63 +0.4
179,869 + 10825 mRNA_2457 0.78 +2.1
179,871 - 10825 mRNA_2457 0.79 +0.2
180,119 - 10825 mRNA_2457 0.88 +1.7
180,293 - +1.5
180,444 + +0.1
180,602 + +0.3
180,935 - +0.7
180,954 - +0.0
180,966 - -0.3
181,074 - +0.3
181,095 + -0.2
181,241 - +0.6
181,253 - +0.4
181,274 + -0.3

Or see this region's nucleotide sequence