Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2473

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10840 and 10841 are separated by 469 nucleotides10841 and 10842 are separated by 699 nucleotides mRNA_2472: 10840 - K07836 RAP1B Ras-related protein Rap-1B, at 228,685 to 229,666 10840 mRNA_2473: 10841 - K01610 E4.1.1.49, pckA phosphoenolpyruvate carboxykinase (ATP), at 230,136 to 233,558 10841 mRNA_2474: 10842 - KOG0603 Ribosomal protein S6 kinase, at 234,258 to 235,956 10842

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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229,652 - +0.5
229,657 + +1.7
229,804 + -0.1
230,109 + +0.2
230,544 + 10841 mRNA_2473 0.12 -0.6
231,249 + 10841 mRNA_2473 0.33 -0.6
231,260 - 10841 mRNA_2473 0.33 -0.0
231,261 + 10841 mRNA_2473 0.33 -0.2
231,421 + 10841 mRNA_2473 0.38 +0.4
231,527 - 10841 mRNA_2473 0.41 +0.9
231,546 + 10841 mRNA_2473 0.41 +0.6
231,688 - 10841 mRNA_2473 0.45 -0.2
232,271 - 10841 mRNA_2473 0.62 +0.7
232,275 + 10841 mRNA_2473 0.62 -0.3
232,424 + 10841 mRNA_2473 0.67 -1.6
232,426 + 10841 mRNA_2473 0.67 -0.2
232,585 + 10841 mRNA_2473 0.72 +0.5
232,718 - 10841 mRNA_2473 0.75 +0.8
232,871 - 10841 mRNA_2473 0.80 +1.2
233,026 - 10841 mRNA_2473 0.84 -0.7
233,026 - 10841 mRNA_2473 0.84 +1.2
233,030 + 10841 mRNA_2473 0.85 +0.3
233,044 - 10841 mRNA_2473 0.85 +2.0
233,049 - 10841 mRNA_2473 0.85 +0.0
233,050 - 10841 mRNA_2473 0.85 +0.5
233,053 + 10841 mRNA_2473 0.85 -0.7
233,056 + 10841 mRNA_2473 0.85 +0.2
233,058 + 10841 mRNA_2473 0.85 -1.2
233,058 + 10841 mRNA_2473 0.85 +1.0
233,061 + 10841 mRNA_2473 0.85 +0.2
233,062 + 10841 mRNA_2473 0.85 -0.5
233,067 + 10841 mRNA_2473 0.86 +0.3
233,089 - 10841 mRNA_2473 0.86 +0.6
233,199 - 10841 mRNA_2473 0.89 +0.9
233,206 - 10841 mRNA_2473 0.90 -1.0
233,209 - 10841 mRNA_2473 0.90 +1.5
233,213 + 10841 mRNA_2473 0.90 +1.3
233,224 + +0.8
233,226 - -0.1
233,234 + +1.1
233,235 - +1.0
233,235 + -0.4
233,236 + -1.7
233,236 + -0.1
233,240 - +1.3
233,242 + -0.5
233,245 - -0.0
233,247 + +0.1
233,248 + +1.3
233,249 - +0.5
233,252 - -0.4
233,257 + +0.1
233,258 + +0.3
233,258 - +0.3
233,258 + +0.1
233,260 + +0.1
233,303 - -0.0
233,304 + -1.3
233,304 + +1.3
233,309 + +0.2
233,309 + +0.4
233,312 + +1.5
233,318 - +0.3
233,324 - +1.7
233,325 - +2.6
233,327 + +0.3
233,330 - -0.8
233,331 - +0.7
233,331 - -0.1
233,334 + +0.6
233,338 - +0.3
233,340 + +1.1
233,346 - +0.1
233,347 + -0.2
233,349 + -0.2
233,353 + -0.3
233,356 + +0.0
233,356 - +0.2
233,359 - +0.6
233,360 - +0.6
233,361 - -1.1
233,370 - +0.0
233,374 + +0.2
233,385 + +1.5
233,386 - -0.2
233,485 - +0.2
233,502 - +0.6
233,508 + -0.1
233,513 + +0.5
233,514 - +0.7
233,639 + -0.4
233,830 + +0.2
233,860 - +0.5
233,926 + +0.2
233,950 - +0.6
233,966 + +0.3
234,238 + +0.1

Or see this region's nucleotide sequence