Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2506

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10873 and 10874 overlap by 2 nucleotides10874 and 10875 are separated by 648 nucleotides mRNA_2505: 10873 - KOG3299 Uncharacterized conserved protein, at 311,631 to 312,608 10873 mRNA_2506: 10874 - HMMPfam-GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p-PF13839, at 312,607 to 314,311 10874 mRNA_2507: 10875 - K11232 YPD1 osomolarity two-component system, phosphorelay intermediate protein YPD1, at 314,960 to 315,808 10875

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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311,620 - -0.3
311,769 + 10873 mRNA_2505 0.14 +1.0
312,350 - 10873 mRNA_2505 0.74 +0.1
312,469 + 10873 mRNA_2505 0.86 +0.2
312,584 - +1.1
312,605 - -0.9
312,607 + +0.3
312,636 + +0.4
312,640 - +0.4
312,778 + 10874 mRNA_2506 0.10 -0.2
312,784 + 10874 mRNA_2506 0.10 +0.1
312,784 - 10874 mRNA_2506 0.10 -1.1
312,791 + 10874 mRNA_2506 0.11 -1.8
313,047 - 10874 mRNA_2506 0.26 +0.8
313,071 - 10874 mRNA_2506 0.27 +1.2
313,083 - 10874 mRNA_2506 0.28 +0.7
313,245 - 10874 mRNA_2506 0.37 +0.6
313,333 - 10874 mRNA_2506 0.43 +0.3
313,363 - 10874 mRNA_2506 0.44 +1.0
313,381 + 10874 mRNA_2506 0.45 +0.5
313,388 + 10874 mRNA_2506 0.46 -0.3
313,409 + 10874 mRNA_2506 0.47 -0.0
313,525 + 10874 mRNA_2506 0.54 +0.4
313,526 - 10874 mRNA_2506 0.54 -0.1
313,671 + 10874 mRNA_2506 0.62 +1.3
313,845 + 10874 mRNA_2506 0.73 +0.4
313,849 - 10874 mRNA_2506 0.73 +0.9
313,873 + 10874 mRNA_2506 0.74 +0.7
313,944 + 10874 mRNA_2506 0.78 +0.6
314,005 + 10874 mRNA_2506 0.82 +0.6
314,092 - 10874 mRNA_2506 0.87 -0.4
314,098 - 10874 mRNA_2506 0.87 +0.3
314,119 - 10874 mRNA_2506 0.89 +0.3
314,124 - 10874 mRNA_2506 0.89 +0.7
314,250 - +0.2
314,256 - +0.5
314,272 + +0.4
314,339 + -0.1
314,380 - +0.6
314,391 + +0.5
314,394 + +0.1
314,496 + +0.0
314,509 + +0.7
314,520 - -0.4
314,536 - +0.1
314,541 - +0.6
314,541 - +0.0
314,546 - +0.2
314,546 - +0.5
314,546 + +0.6
314,550 + -0.1
314,553 - +0.5
314,617 + +0.6
314,673 - -0.4
314,674 + +0.5
314,679 + +0.3
314,685 - -0.1
314,689 + +0.4
314,696 + +0.1
314,708 + -0.6
314,723 + -0.1
314,739 + +0.7

Or see this region's nucleotide sequence