Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2531

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10899 and 10900 are separated by 173 nucleotides mRNA_2531: 10899 - KOG2816 Predicted transporter ADD1 (major facilitator superfamily), at 372,269 to 375,397 10899 mRNA_2532: 10900 - KOG2961 Predicted hydrolase (HAD superfamily), at 375,571 to 377,208 10900

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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371,550 + +0.2
371,642 + +0.6
371,663 - -1.3
371,667 + +0.4
371,813 + +0.3
371,927 - +0.7
371,932 - +1.2
371,943 - +1.4
371,943 - +0.4
371,948 - -1.2
371,956 - +0.3
372,111 + +1.5
372,135 - +0.7
372,512 - +0.9
372,997 - 10899 mRNA_2531 0.23 -0.7
373,027 + 10899 mRNA_2531 0.24 +0.1
373,157 + 10899 mRNA_2531 0.28 +1.2
373,399 - 10899 mRNA_2531 0.36 -0.2
373,667 + 10899 mRNA_2531 0.45 +0.8
373,737 - 10899 mRNA_2531 0.47 +1.0
374,341 - 10899 mRNA_2531 0.66 +0.3
374,774 + 10899 mRNA_2531 0.80 +1.3
375,306 + +0.7
375,339 + +0.0
375,345 - +0.1
375,473 - -0.8
375,501 + -0.1
375,506 + +0.2
375,561 - -0.4

Or see this region's nucleotide sequence