Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2538

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10905 and 10906 are separated by 169 nucleotides10906 and 10907 are separated by 272 nucleotides mRNA_2537: 10905 - BLAST Alba domain-containing protein [Rhizoctonia solani AG..., at 392,613 to 393,652 10905 mRNA_2538: 10906 - SUPERFAMILY--SSF56112, at 393,822 to 395,821 10906 mRNA_2539: 10907 - Hypothetical Protein, at 396,094 to 398,437 10907

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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393,569 + -0.6
393,869 + +0.4
394,613 - 10906 mRNA_2538 0.40 +0.0
394,716 - 10906 mRNA_2538 0.45 +1.1
394,864 + 10906 mRNA_2538 0.52 -0.0
394,869 + 10906 mRNA_2538 0.52 -0.2
395,138 - 10906 mRNA_2538 0.66 +0.6
395,441 + 10906 mRNA_2538 0.81 +0.2
395,554 - 10906 mRNA_2538 0.87 +0.4
395,578 + 10906 mRNA_2538 0.88 -0.8
395,600 + 10906 mRNA_2538 0.89 -0.1
395,608 + 10906 mRNA_2538 0.89 +0.3
395,610 - 10906 mRNA_2538 0.89 -0.1
395,747 + +1.0
395,794 + +1.1
395,926 + -0.7
396,024 + +0.5
396,048 - +1.1
396,172 + +0.3
396,180 - +0.3
396,196 - +0.4
396,196 - +0.5
396,208 + -0.3
396,367 + 10907 mRNA_2539 0.12 +1.4
396,464 + 10907 mRNA_2539 0.16 -0.2
396,528 + 10907 mRNA_2539 0.19 -0.8

Or see this region's nucleotide sequence