Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2562

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10929 and 10930 are separated by 250 nucleotides10930 and 10931 are separated by 273 nucleotides mRNA_2561: 10929 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 446,568 to 451,968 10929 mRNA_2562: 10930 - Hypothetical Protein, at 452,219 to 453,821 10930 mRNA_2563: 10931 - Interpro F-box-like, at 454,095 to 455,181 10931

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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452,291 - +0.1
452,449 + 10930 mRNA_2562 0.14 +0.9
452,453 - 10930 mRNA_2562 0.15 -0.5
452,543 + 10930 mRNA_2562 0.20 +0.1
452,606 + 10930 mRNA_2562 0.24 +0.1
452,704 - 10930 mRNA_2562 0.30 -1.1
452,798 - 10930 mRNA_2562 0.36 +0.3
453,039 + 10930 mRNA_2562 0.51 +1.1
453,102 - 10930 mRNA_2562 0.55 -1.3
453,267 - 10930 mRNA_2562 0.65 +0.6
453,277 + 10930 mRNA_2562 0.66 +0.4
453,284 - 10930 mRNA_2562 0.66 -1.1
453,453 - 10930 mRNA_2562 0.77 +0.2
453,456 + 10930 mRNA_2562 0.77 +0.8
453,579 + 10930 mRNA_2562 0.85 -0.6
453,724 + -1.1
453,745 + -0.8
453,886 - +1.2
454,141 + +0.4
454,170 + +2.0
454,174 + -0.0
454,287 + 10931 mRNA_2563 0.18 +0.1
454,432 - 10931 mRNA_2563 0.31 +0.8
454,477 - 10931 mRNA_2563 0.35 +0.2
454,585 + 10931 mRNA_2563 0.45 -0.6
454,635 - 10931 mRNA_2563 0.50 +0.3

Or see this region's nucleotide sequence