Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2643

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11010 and 11011 are separated by 266 nucleotides11011 and 11012 are separated by 169 nucleotides mRNA_2642: 11010 - K17428 MRPL47, NCM1 large subunit ribosomal protein L47, at 659,870 to 660,906 11010 mRNA_2643: 11011 - K01254 LTA4H leukotriene-A4 hydrolase, at 661,173 to 664,262 11011 mRNA_2644: 11012 - SUPERFAMILY--SSF52058, at 664,432 to 665,418 11012

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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660,920 - -0.2
660,931 + +0.7
661,076 + -0.6
661,086 + +0.6
661,088 - +0.8
661,158 - -0.6
661,386 - -0.2
661,696 - 11011 mRNA_2643 0.17 -1.4
661,807 - 11011 mRNA_2643 0.21 +1.2
661,821 - 11011 mRNA_2643 0.21 -0.8
661,855 + 11011 mRNA_2643 0.22 +0.3
662,132 - 11011 mRNA_2643 0.31 +0.8
662,132 - 11011 mRNA_2643 0.31 +1.6
662,422 - 11011 mRNA_2643 0.40 +0.7
662,460 + 11011 mRNA_2643 0.42 +0.6
662,688 - 11011 mRNA_2643 0.49 +0.7
663,132 - 11011 mRNA_2643 0.63 +0.4
663,154 + 11011 mRNA_2643 0.64 -0.1
663,175 + 11011 mRNA_2643 0.65 -0.2
663,302 + 11011 mRNA_2643 0.69 +0.4
663,447 + 11011 mRNA_2643 0.74 -0.7
663,624 - 11011 mRNA_2643 0.79 +0.5
663,770 + 11011 mRNA_2643 0.84 +0.4
663,897 + 11011 mRNA_2643 0.88 +1.0
664,051 - -0.1
664,272 + +0.3
664,351 + +0.1
664,428 - +0.5
664,460 + +0.1
664,478 + +0.8
664,481 - +0.3
664,487 + -0.3
664,604 - 11012 mRNA_2644 0.17 +0.7

Or see this region's nucleotide sequence