Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2650

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11018 and 11019 are separated by 564 nucleotides mRNA_2650: 11018 - BLAST Plasma membrane fusion protein PRM1 [Grifola frondosa], at 676,679 to 679,842 11018 mRNA_2651: 11019 - Hypothetical Protein, at 680,407 to 680,751 11019

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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675,695 - -0.2
675,695 - +0.5
675,709 + -0.1
675,744 - +0.9
675,967 + +1.2
675,970 + -0.1
675,987 + +0.6
675,990 - +0.3
676,092 - +1.3
676,102 + +0.9
676,131 + +0.3
676,234 + -0.2
676,246 - +0.2
676,250 - -0.6
676,253 - +1.1
676,397 - +0.7
676,406 + +1.4
676,555 - +1.1
676,703 + +0.5
676,706 - +0.2
676,717 - -1.6
677,025 + 11018 mRNA_2650 0.11 -0.0
677,025 + 11018 mRNA_2650 0.11 +0.8
677,435 + 11018 mRNA_2650 0.24 +1.2
677,614 - 11018 mRNA_2650 0.30 +1.5
677,852 - 11018 mRNA_2650 0.37 +0.2
677,927 - 11018 mRNA_2650 0.39 +0.3
677,954 + 11018 mRNA_2650 0.40 +0.3
677,991 - 11018 mRNA_2650 0.41 +0.5
677,991 - 11018 mRNA_2650 0.41 -0.0
678,230 + 11018 mRNA_2650 0.49 +0.6
678,269 + 11018 mRNA_2650 0.50 +0.5
678,452 + 11018 mRNA_2650 0.56 -0.6
678,453 + 11018 mRNA_2650 0.56 +0.0
678,506 - 11018 mRNA_2650 0.58 +1.0
678,514 + 11018 mRNA_2650 0.58 -0.5
678,596 + 11018 mRNA_2650 0.61 -0.7
678,830 - 11018 mRNA_2650 0.68 +0.5
678,844 - 11018 mRNA_2650 0.68 -0.5
678,870 + 11018 mRNA_2650 0.69 -0.7
679,001 + 11018 mRNA_2650 0.73 -0.0
679,004 - 11018 mRNA_2650 0.73 +0.9
679,034 - 11018 mRNA_2650 0.74 -0.2
679,149 + 11018 mRNA_2650 0.78 +0.2
679,362 - 11018 mRNA_2650 0.85 +0.6
679,445 + 11018 mRNA_2650 0.87 -1.4
679,561 - +0.3
679,584 + +1.7
679,887 - +1.1
679,901 + +0.5
680,298 - +0.5
680,371 - +0.4
680,375 - +0.2
680,473 - 11019 mRNA_2651 0.19 -0.3
680,507 - 11019 mRNA_2651 0.29 +0.2
680,610 + 11019 mRNA_2651 0.59 +0.0
680,776 + +1.9
680,782 + +1.0

Or see this region's nucleotide sequence