Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2653

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11020 and 11021 are separated by 559 nucleotides mRNA_2652: 11020 - Hypothetical Protein, at 680,993 to 681,631 11020 mRNA_2653: 11021 - K15040 VDAC2 voltage-dependent anion channel protein 2, at 682,191 to 683,966 11021

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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681,495 + 11020 mRNA_2652 0.79 +1.1
681,673 + +0.5
681,685 - +0.3
681,694 + +1.2
681,725 - +0.2
681,769 + +0.7
681,786 + +0.4
681,801 - +2.0
681,866 + +0.8
681,935 - +0.6
681,952 + +0.4
681,966 - -0.4
683,984 - +1.7
683,994 - +1.8
684,007 - +0.5
684,009 - -0.2
684,012 - -0.7
684,020 + +0.1
684,025 - +0.1
684,030 + -1.2
684,032 - +0.5
684,037 + +0.3
684,038 - -0.3
684,043 + -0.1
684,122 - +1.6
684,149 + +0.5
684,181 - +1.9
684,182 - +0.5
684,312 - +1.8
684,328 + +0.2
684,329 - +1.5
684,475 - +0.9
684,480 + +1.3
684,588 + -0.3
684,596 - +0.6
684,774 - +0.9
684,903 + -0.8
684,903 - -0.2
684,906 + -0.0
684,907 + +0.6
684,922 + -0.2
684,923 - -0.3
684,935 + -0.4

Or see this region's nucleotide sequence