Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2664

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11031 and 11032 are separated by 752 nucleotides mRNA_2663: 11031 - Hypothetical Protein, at 707,646 to 708,293 11031 mRNA_2664: 11032 - Hypothetical Protein, at 709,046 to 711,250 11032

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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708,170 - 11031 mRNA_2663 0.81 +0.3
708,225 + 11031 mRNA_2663 0.89 +0.1
708,232 - +1.6
708,681 + +0.5
708,788 + -0.1
708,823 - +1.2
708,836 + +0.2
708,843 + +0.1
708,867 + +0.5
709,284 - 11032 mRNA_2664 0.11 +0.3
709,671 - 11032 mRNA_2664 0.28 +0.3
709,812 - 11032 mRNA_2664 0.35 +1.8
709,871 - 11032 mRNA_2664 0.37 -0.2
709,924 + 11032 mRNA_2664 0.40 +1.7
709,990 + 11032 mRNA_2664 0.43 +0.4
710,040 + 11032 mRNA_2664 0.45 -0.0
710,078 - 11032 mRNA_2664 0.47 -0.3
710,316 - 11032 mRNA_2664 0.58 +0.3
710,325 + 11032 mRNA_2664 0.58 +0.8
710,889 + 11032 mRNA_2664 0.84 +0.2
711,036 + +1.5
711,227 + +1.0
711,238 + -0.2
711,249 + -1.0
711,311 + +0.6
711,326 - +0.5
711,329 - +0.6
711,333 - +0.7
711,335 + +0.1
711,335 + -0.4
711,336 + +0.3
711,341 + -0.8
711,342 + +2.3
711,345 - -0.0
711,346 + +0.4
711,346 + +0.0
711,348 - +0.9
711,348 + +0.2
711,348 + +0.7
711,374 - -0.2
711,377 - +0.0
711,380 - +0.1
711,382 + +0.0
711,385 - +0.4
711,389 + +0.2
711,391 - +0.4
711,393 + -0.2
711,395 + -1.0
711,440 - +0.1
711,444 + -0.3
711,473 + +0.4
711,483 - -0.4
711,483 - +0.2
711,484 + +1.0
711,486 + -0.3
711,487 - -0.7
711,495 + -0.8
711,496 + -0.0
711,500 - -0.4
711,501 - -0.1
711,505 + +1.0
711,505 + -0.5
711,507 - -0.2
711,510 - -0.5
711,520 - +1.0
711,537 + +0.3
711,541 + +0.2
711,592 + +1.5
711,605 + -0.0
711,610 - -0.2
711,623 - +0.7
711,624 - -0.7
711,631 + +0.4
711,645 + +0.5
711,655 + -1.0
711,695 + -0.5
711,734 - +0.1
711,759 + +0.6
711,770 - +0.1
711,775 - +2.8
711,775 - -0.9
711,776 + +0.3
711,779 + +1.2
711,791 + -0.6
711,801 + -1.8
711,801 - +0.1
711,803 + +0.8
711,849 - +0.9
711,922 - +0.1
712,181 - +0.0
712,205 + -1.1
712,223 - +0.4

Or see this region's nucleotide sequence