Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2666

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11033 and 11034 are separated by 357 nucleotides11034 and 11035 are separated by 593 nucleotides mRNA_2665: 11033 - HMMPfam-Protein of unknown function (DUF3431)-PF11913, at 712,409 to 714,651 11033 mRNA_2666: 11034 - HMMPfam-Lipase (class 3)-PF01764,SUPERFAMILY--SSF53474, at 715,009 to 717,266 11034 mRNA_2667: 11035 - K05535 MNN2 alpha 1,2-mannosyltransferase, at 717,860 to 720,887 11035

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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714,658 + +0.7
714,969 + -0.0
715,691 + 11034 mRNA_2666 0.30 +0.7
715,720 + 11034 mRNA_2666 0.31 +1.0
715,807 + 11034 mRNA_2666 0.35 +2.2
715,825 - 11034 mRNA_2666 0.36 +0.3
715,958 + 11034 mRNA_2666 0.42 +0.2
715,959 - 11034 mRNA_2666 0.42 +0.9
715,997 + 11034 mRNA_2666 0.44 +1.0
716,376 - 11034 mRNA_2666 0.61 +0.6
716,579 + 11034 mRNA_2666 0.70 -0.6
716,597 - 11034 mRNA_2666 0.70 +0.9
716,602 + 11034 mRNA_2666 0.71 -0.2
716,699 + 11034 mRNA_2666 0.75 +0.4
716,707 - 11034 mRNA_2666 0.75 +1.8
716,759 + 11034 mRNA_2666 0.78 +0.1
716,762 + 11034 mRNA_2666 0.78 +1.4
716,776 + 11034 mRNA_2666 0.78 +0.7
716,894 - 11034 mRNA_2666 0.83 +0.5
716,924 - 11034 mRNA_2666 0.85 -0.5
716,953 - 11034 mRNA_2666 0.86 +0.5
717,048 - -0.3
717,069 + +0.2
717,107 - -0.0
717,216 + +0.9
717,226 - +1.0
717,229 - +0.0
717,230 + +0.3
717,231 - -0.3
717,243 - +1.5
717,243 - +0.6
717,245 - +0.4
717,245 - +0.1
717,248 + +0.8
717,248 - -0.6
717,250 - -0.7
717,251 + +0.1
717,253 + +0.0
717,258 + +1.2
717,268 - +0.8
717,272 + -0.5
717,275 - +0.9
717,279 + -0.4
717,279 + +0.6
717,279 + +0.3
717,303 + +0.4
717,326 + -0.1
717,354 + -0.1
717,426 + -0.4
717,438 - +0.9
717,443 + +0.5
717,447 + +1.8
717,448 - -0.2
717,449 + +0.1
717,456 - +1.1
717,456 - +0.4
717,456 - +1.8
717,466 + +0.4
717,595 - +0.7
717,597 - +0.1
717,622 + +0.5
717,633 + +1.3
717,645 - +0.9
717,649 - -0.1
717,656 + -0.3
717,668 - +0.4
717,791 + +0.0
717,798 - +0.1
717,807 + -0.6
717,809 + -0.0
717,915 + -0.6
718,111 + -0.9
718,226 - 11035 mRNA_2667 0.12 +0.0

Or see this region's nucleotide sequence