Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2688

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11055 and 11056 are separated by 537 nucleotides11056 and 11057 are separated by 264 nucleotides mRNA_2687: 11055 - K16542 CDK5RAP2 CDK5 regulatory subunit-associated protein 2, at 3,683 to 8,144 11055 mRNA_2688: 11056 - Hypothetical Protein, at 8,682 to 9,968 11056 mRNA_2689: 11057 - K07422 CYP2U1 cytochrome P450, family 2, subfamily U, polypeptide 1, at 10,233 to 12,338 11057

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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8,187 - -1.5
8,190 - -1.1
8,203 + -1.2
8,306 - -0.1
8,314 - +1.0
8,316 + -0.7
8,317 + +0.2
8,445 + +0.4
8,455 + +0.7
8,459 - +0.0
8,473 - +1.1
8,478 + -0.2
8,604 - +0.6
8,709 - +0.8
8,754 + -0.1
9,211 - 11056 mRNA_2688 0.41 +2.5
9,677 - 11056 mRNA_2688 0.77 +1.0
9,797 - 11056 mRNA_2688 0.87 +0.5
9,923 + +1.7
10,066 + +0.1
10,122 + +0.0
10,352 - +1.6
10,613 - 11057 mRNA_2689 0.18 +0.1
10,676 + 11057 mRNA_2689 0.21 -0.0
10,948 + 11057 mRNA_2689 0.34 +0.2
10,955 + 11057 mRNA_2689 0.34 +0.3
10,955 + 11057 mRNA_2689 0.34 +0.2
10,955 + 11057 mRNA_2689 0.34 +0.2

Or see this region's nucleotide sequence