Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2694

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11061 and 11062 are separated by 395 nucleotides mRNA_2693: 11061 - K18470 ARHGAP1, CDC42GAP Rho GTPase-activating protein 1, at 18,614 to 20,530 11061 mRNA_2694: 11062 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF54695, at 20,926 to 22,511 11062

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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20,002 + 11061 mRNA_2693 0.72 +1.3
20,007 + 11061 mRNA_2693 0.73 -0.5
20,031 - 11061 mRNA_2693 0.74 +0.4
20,074 + 11061 mRNA_2693 0.76 +0.5
20,079 + 11061 mRNA_2693 0.76 +2.5
20,123 + 11061 mRNA_2693 0.79 +0.8
20,310 - 11061 mRNA_2693 0.88 +0.7
20,466 - +1.3
20,610 - +0.4
20,614 - +0.5
20,616 - +1.4
20,617 - -0.2
20,628 + -1.3
20,664 + -0.3
20,707 + -0.0
20,724 + -1.3
20,765 - +1.0
20,784 - +0.6
20,792 - +0.3
20,922 - -0.7
20,923 + +0.6
20,930 + -0.5
20,935 + -0.6
20,959 - +0.0
20,959 - -0.0
20,960 - +0.5
20,960 - +0.8
20,966 + +0.1
20,972 - +0.7
20,979 + -0.0
21,305 - 11062 mRNA_2694 0.24 -0.3
21,312 + 11062 mRNA_2694 0.24 +0.7
21,358 + 11062 mRNA_2694 0.27 -0.3
21,372 - 11062 mRNA_2694 0.28 +0.1
21,834 - 11062 mRNA_2694 0.57 +0.4
22,077 + 11062 mRNA_2694 0.73 +0.3
22,194 + 11062 mRNA_2694 0.80 +0.8
22,197 - 11062 mRNA_2694 0.80 +1.1
22,234 - 11062 mRNA_2694 0.82 -0.8
22,318 + 11062 mRNA_2694 0.88 +0.3
22,460 - +0.1
22,535 + +0.5
22,547 - +0.3
22,584 + +0.0
22,644 - -0.0
22,653 - +0.0
22,664 + +1.0
22,664 + +0.3
22,669 - +1.0
22,682 + -0.2
22,826 - +0.6
22,834 + +0.2
22,975 - -0.3
22,975 - -1.2
23,076 + -1.0
23,235 - +0.1
23,391 - +0.1
23,404 - -0.1
23,406 - +1.4
23,412 - -0.5
23,429 + +0.9
23,435 - +0.3

Or see this region's nucleotide sequence