Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2697

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11064 and 11065 are separated by 890 nucleotides11065 and 11066 are separated by 333 nucleotides mRNA_2696: 11064 - K02147 ATPeV1B, ATP6B V-type H+-transporting ATPase subunit B, at 25,787 to 28,355 11064 mRNA_2697: 11065 - Hypothetical Protein, at 29,246 to 31,443 11065 mRNA_2698: 11066 - Hypothetical Protein, at 31,777 to 32,871 11066

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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28,411 - -0.2
28,688 - +0.4
28,697 - +0.6
28,716 + +1.2
28,845 + +0.1
29,004 - -0.2
29,011 + +1.6
29,014 - +0.7
29,024 - -0.1
29,032 + +0.7
29,033 - -0.4
29,044 - +0.1
29,045 - +0.3
29,160 - +0.7
29,161 - +1.1
29,186 + +0.9
29,323 - -0.4
29,367 - +0.6
29,611 + 11065 mRNA_2697 0.17 +1.2
29,740 - 11065 mRNA_2697 0.22 -0.2
29,745 - 11065 mRNA_2697 0.23 +0.3
29,746 - 11065 mRNA_2697 0.23 -0.1
29,763 - 11065 mRNA_2697 0.24 -0.0
29,900 - 11065 mRNA_2697 0.30 +0.2
29,930 - 11065 mRNA_2697 0.31 +0.2
30,022 + 11065 mRNA_2697 0.35 +0.7
30,100 + 11065 mRNA_2697 0.39 +2.2
30,373 - 11065 mRNA_2697 0.51 +0.2
30,508 - 11065 mRNA_2697 0.57 -0.4
30,519 + 11065 mRNA_2697 0.58 -0.1
30,784 - 11065 mRNA_2697 0.70 -0.2
30,802 + 11065 mRNA_2697 0.71 +0.7
30,846 - 11065 mRNA_2697 0.73 -0.5
30,949 + 11065 mRNA_2697 0.77 -0.2
30,953 - 11065 mRNA_2697 0.78 +0.7
31,071 + 11065 mRNA_2697 0.83 +0.2
31,210 - 11065 mRNA_2697 0.89 +0.5
31,235 + -0.2
31,245 + +1.0
31,247 + -0.5
31,255 + +2.2
31,276 - +0.9
31,515 + -0.4
31,657 - +2.2
31,691 - +0.2
31,697 + +0.6
31,770 - -0.0

Or see this region's nucleotide sequence