Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2698

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11065 and 11066 are separated by 333 nucleotides mRNA_2697: 11065 - Hypothetical Protein, at 29,246 to 31,443 11065 mRNA_2698: 11066 - Hypothetical Protein, at 31,777 to 32,871 11066

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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30,784 - 11065 mRNA_2697 0.70 -0.2
30,802 + 11065 mRNA_2697 0.71 +0.7
30,846 - 11065 mRNA_2697 0.73 -0.5
30,949 + 11065 mRNA_2697 0.77 -0.2
30,953 - 11065 mRNA_2697 0.78 +0.7
31,071 + 11065 mRNA_2697 0.83 +0.2
31,210 - 11065 mRNA_2697 0.89 +0.5
31,235 + -0.2
31,245 + +1.0
31,247 + -0.5
31,255 + +2.2
31,276 - +0.9
31,515 + -0.4
31,657 - +2.2
31,691 - +0.2
31,697 + +0.6
31,770 - -0.0
32,510 - 11066 mRNA_2698 0.67 +0.3
32,539 - 11066 mRNA_2698 0.70 +1.2
32,551 - 11066 mRNA_2698 0.71 -0.4
32,659 + 11066 mRNA_2698 0.81 -0.6
32,669 + 11066 mRNA_2698 0.81 +1.1
32,803 - -0.4
32,817 - +0.2
32,819 + +0.4
32,820 + -0.9
32,828 + -1.3
32,830 - +0.1
32,842 - +1.1
32,855 - +0.4
32,864 - +0.5
32,865 + -0.8
32,866 - +0.3
32,867 - +1.4
32,871 - +1.0
32,874 + +0.2
32,906 - +1.3
32,907 + +0.2
32,914 - +1.1
32,916 + -0.4
33,298 + -0.1
33,479 - +1.4
33,572 - -0.2
33,614 - +1.0
33,636 + +0.7
33,758 + +1.1
33,772 + +0.5

Or see this region's nucleotide sequence