Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2707

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11074 and 11075 are separated by 445 nucleotides mRNA_2706: 11074 - HMMPfam-PLAC8 family-PF04749,TIGRFAM-A_thal_Cys_rich uncharacterized Cys-rich domain-TIGR01571, at 47,300 to 48,078 11074 mRNA_2707: 11075 - KOG0254 Predicted transporter (major facilitator superfamily), at 48,524 to 50,718 11075

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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47,582 + 11074 mRNA_2706 0.36 +0.2
47,717 + 11074 mRNA_2706 0.54 +0.3
47,950 - 11074 mRNA_2706 0.83 -0.0
47,966 + 11074 mRNA_2706 0.85 -0.1
48,263 + -0.1
48,325 - +1.6
48,540 + -1.6
48,700 - +0.4
49,112 + 11075 mRNA_2707 0.27 -1.1
49,249 + 11075 mRNA_2707 0.33 -1.0
49,360 + 11075 mRNA_2707 0.38 -2.0
49,380 - 11075 mRNA_2707 0.39 -1.7
49,408 + 11075 mRNA_2707 0.40 -0.3
49,687 - 11075 mRNA_2707 0.53 -1.0
49,700 - 11075 mRNA_2707 0.54 -0.9
49,706 + 11075 mRNA_2707 0.54 -0.5
49,810 - 11075 mRNA_2707 0.59 -2.3
49,967 + 11075 mRNA_2707 0.66 -0.9
50,124 - 11075 mRNA_2707 0.73 -1.5
50,294 - 11075 mRNA_2707 0.81 -1.4
50,377 - 11075 mRNA_2707 0.84 +0.3
50,406 + 11075 mRNA_2707 0.86 -2.2
50,429 - 11075 mRNA_2707 0.87 +0.4
50,442 - 11075 mRNA_2707 0.87 -1.6
50,546 - -0.2
50,552 - -0.4
50,701 - -0.5
50,812 - -0.3
50,826 - -1.1
50,855 - -0.1
50,856 - -0.4
50,857 - +0.5
50,861 + +0.4
50,874 - +1.5
50,875 - +0.3
50,877 - +0.1
50,912 + -0.5
51,005 - +1.5
51,018 - +0.9
51,025 + +0.8
51,027 + -0.0
51,043 + +0.5
51,050 + +0.1
51,050 + +1.1
51,058 + +0.4
51,062 + -2.0
51,080 - +0.8
51,086 - -1.6
51,116 - +2.1
51,171 - +0.2
51,183 - +0.1
51,188 + +1.6
51,190 + -0.8
51,346 + +0.2
51,489 - +0.3
51,522 - -0.2
51,711 + -1.3

Or see this region's nucleotide sequence