Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2729

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11096 and 11097 are separated by 459 nucleotides11097 and 11098 overlap by 2 nucleotides11098 and 11099 are separated by 10 nucleotides mRNA_2728: 11096 - Hypothetical Protein, at 89,021 to 89,898 11096 mRNA_2729: 11097 - KOG1485 Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily), at 90,358 to 92,251 11097 mRNA_2730: 11098 - Hypothetical Protein, at 92,250 to 93,018 11098 mRNA_2731: 11099 - HMMPfam-Domain of unknown function (DUF4112)-PF13430, at 93,029 to 93,911 11099

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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89,421 - 11096 mRNA_2728 0.46 -0.0
89,520 - 11096 mRNA_2728 0.57 +2.9
89,596 + 11096 mRNA_2728 0.65 -0.1
89,608 + 11096 mRNA_2728 0.67 +0.3
89,719 - 11096 mRNA_2728 0.79 +0.9
89,724 + 11096 mRNA_2728 0.80 +0.2
89,725 + 11096 mRNA_2728 0.80 -0.1
89,883 + +0.7
90,017 + -0.1
90,018 + +0.4
90,038 - -0.1
90,045 + -0.1
90,179 + +0.2
90,437 - -0.0
90,487 + +0.1
91,077 - 11097 mRNA_2729 0.38 +0.1
91,087 + 11097 mRNA_2729 0.38 +0.6
91,103 - 11097 mRNA_2729 0.39 -0.3
92,091 - -0.1
92,205 + +0.1
92,383 - 11098 mRNA_2730 0.17 +0.8
92,385 - 11098 mRNA_2730 0.18 -0.3
92,402 + 11098 mRNA_2730 0.20 +1.1
92,504 + 11098 mRNA_2730 0.33 +0.5
92,524 - 11098 mRNA_2730 0.36 +0.5
92,661 - 11098 mRNA_2730 0.53 +0.3
92,671 - 11098 mRNA_2730 0.55 +0.7
92,672 - 11098 mRNA_2730 0.55 -1.5
92,674 + 11098 mRNA_2730 0.55 -0.7
92,675 - 11098 mRNA_2730 0.55 -0.8
92,687 - 11098 mRNA_2730 0.57 +0.2
92,691 - 11098 mRNA_2730 0.57 +1.0
92,691 - 11098 mRNA_2730 0.57 +0.0
92,695 + 11098 mRNA_2730 0.58 +0.7
92,695 + 11098 mRNA_2730 0.58 +0.1
92,697 + 11098 mRNA_2730 0.58 -0.7
92,697 + 11098 mRNA_2730 0.58 +0.5
92,706 + 11098 mRNA_2730 0.59 -0.4
92,709 - 11098 mRNA_2730 0.60 +0.1
92,712 - 11098 mRNA_2730 0.60 -2.4
92,715 + 11098 mRNA_2730 0.60 +0.4
92,715 + 11098 mRNA_2730 0.60 -0.5
92,716 - 11098 mRNA_2730 0.61 +1.0
92,716 + 11098 mRNA_2730 0.61 +1.0
92,716 + 11098 mRNA_2730 0.61 +0.1
92,716 - 11098 mRNA_2730 0.61 +2.1
92,727 + 11098 mRNA_2730 0.62 +0.1
92,731 - 11098 mRNA_2730 0.63 +0.9
92,732 + 11098 mRNA_2730 0.63 +0.4
92,733 + 11098 mRNA_2730 0.63 +0.8
92,785 - 11098 mRNA_2730 0.70 +0.4
92,826 - 11098 mRNA_2730 0.75 -0.8
92,834 - 11098 mRNA_2730 0.76 +0.3
92,841 + 11098 mRNA_2730 0.77 +0.4
92,843 - 11098 mRNA_2730 0.77 +0.5
92,862 + 11098 mRNA_2730 0.80 +1.1
92,961 + +1.9
92,980 - +1.3
92,983 - +0.5
93,115 - -1.2

Or see this region's nucleotide sequence