Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2738

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11106 and 11107 are separated by 418 nucleotides mRNA_2738: 11106 - K20121 FNBP1 formin-binding protein 1, at 107,722 to 109,356 11106 mRNA_2739: 11107 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 109,775 to 112,160 11107

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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106,844 - +1.0
106,862 + +0.9
106,986 + -0.3
107,149 - -0.6
107,323 + +0.6
107,732 - +1.1
107,853 + +0.6
108,063 - 11106 mRNA_2738 0.21 +0.3
108,176 - 11106 mRNA_2738 0.28 +1.3
108,334 - 11106 mRNA_2738 0.37 +0.9
108,561 + 11106 mRNA_2738 0.51 -0.3
108,604 + 11106 mRNA_2738 0.54 +1.0
108,647 - 11106 mRNA_2738 0.57 +0.6
108,728 - 11106 mRNA_2738 0.62 +0.3
108,784 - 11106 mRNA_2738 0.65 -0.6
108,814 + 11106 mRNA_2738 0.67 +0.3
108,872 + 11106 mRNA_2738 0.70 -0.5
109,359 - +0.4
109,597 + +1.4
109,866 + +2.1
110,095 + 11107 mRNA_2739 0.13 +0.3
110,170 - 11107 mRNA_2739 0.17 -0.3
110,219 + 11107 mRNA_2739 0.19 -0.5

Or see this region's nucleotide sequence