Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2801

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11168 and 11169 are separated by 343 nucleotides11169 and 11170 are separated by 21 nucleotides mRNA_2800: 11168 - SUPERFAMILY--SSF52047, at 245,486 to 250,213 11168 mRNA_2801: 11169 - Hypothetical Protein, at 250,557 to 251,555 11169 mRNA_2802: 11170 - K11309 RTT109, KAT11 regulator of Ty1 transposition protein 109, at 251,577 to 253,280 11170

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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249,615 + 11168 mRNA_2800 0.87 +1.1
250,034 + +0.6
250,349 + +0.5
250,491 - +0.4
250,601 + +1.1
250,702 + 11169 mRNA_2801 0.15 -0.5
250,726 - 11169 mRNA_2801 0.17 -0.0
250,771 - 11169 mRNA_2801 0.21 +0.1
250,810 + 11169 mRNA_2801 0.25 +0.0
250,893 - 11169 mRNA_2801 0.34 +0.3
250,930 + 11169 mRNA_2801 0.37 -0.3
251,012 - 11169 mRNA_2801 0.46 +0.2
251,057 + 11169 mRNA_2801 0.50 +0.4
251,193 - 11169 mRNA_2801 0.64 +1.3
251,219 - 11169 mRNA_2801 0.66 +0.5
251,384 - 11169 mRNA_2801 0.83 +0.9
251,384 + 11169 mRNA_2801 0.83 +0.9
251,480 - -0.4
251,534 - +1.9
251,588 + +0.1
252,537 - 11170 mRNA_2802 0.56 +0.8

Or see this region's nucleotide sequence