Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2882

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11249 and 11250 are separated by 736 nucleotides mRNA_2881: 11249 - KOG0254 Predicted transporter (major facilitator superfamily), at 439,393 to 442,330 11249 mRNA_2882: 11250 - Hypothetical Protein, at 443,067 to 444,033 11250

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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442,149 - +0.3
442,273 - +0.3
442,279 + +0.8
442,286 - +1.5
442,292 - +0.0
442,375 + +1.1
442,388 - +0.6
442,414 - +0.3
442,434 - +0.2
442,566 - +1.0
442,737 - +0.4
443,016 - -0.2
443,168 + 11250 mRNA_2882 0.10 +0.3
443,325 - 11250 mRNA_2882 0.27 +0.8
443,330 - 11250 mRNA_2882 0.27 +0.0
443,337 - 11250 mRNA_2882 0.28 +1.5
443,522 - 11250 mRNA_2882 0.47 +0.2
443,793 - 11250 mRNA_2882 0.75 +1.3
443,952 - -2.4
444,035 - +1.1
444,100 + +0.4
444,257 + -0.6
444,361 + +0.3
444,388 - +0.7
444,393 - +0.4
444,474 - +1.3
444,645 + -0.0
444,669 - +0.1
444,828 - +0.2
444,965 + +0.6

Or see this region's nucleotide sequence