Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2904

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11271 and 11272 are separated by 166 nucleotides11272 and 11273 are separated by 111 nucleotides mRNA_2903: 11271 - K06662 HRAD17, RAD24 cell cycle checkpoint protein, at 500,559 to 503,580 11271 mRNA_2904: 11272 - K03847 ALG12 alpha-1,6-mannosyltransferase, at 503,747 to 505,698 11272 mRNA_2905: 11273 - Hypothetical Protein, at 505,810 to 506,740 11273

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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502,933 + 11271 mRNA_2903 0.79 -1.4
503,382 - -0.4
503,444 + +1.2
503,702 - +0.4
503,702 + -0.1
504,007 - 11272 mRNA_2904 0.13 +1.6
504,046 + 11272 mRNA_2904 0.15 +1.1
504,147 - 11272 mRNA_2904 0.20 -0.0
504,303 + 11272 mRNA_2904 0.28 +0.6
504,310 + 11272 mRNA_2904 0.29 +1.6
504,886 - 11272 mRNA_2904 0.58 +0.7
504,901 + 11272 mRNA_2904 0.59 -0.3
505,037 + 11272 mRNA_2904 0.66 +0.0
505,167 - 11272 mRNA_2904 0.73 -0.1
505,174 + 11272 mRNA_2904 0.73 +0.1
505,205 - 11272 mRNA_2904 0.75 +1.5
505,706 + +0.3
505,793 + +2.4
506,471 - 11273 mRNA_2905 0.71 +0.3

Or see this region's nucleotide sequence