Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2907

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11274 and 11275 are separated by 928 nucleotides11275 and 11276 are separated by 104 nucleotides mRNA_2906: 11274 - K02960 RP-S16e, RPS16 small subunit ribosomal protein S16e, at 508,633 to 509,349 11274 mRNA_2907: 11275 - HMMPfam-FAD dependent oxidoreductase-PF01266,SUPERFAMILY--SSF51971, at 510,278 to 512,745 11275 mRNA_2908: 11276 - KOG3098 Uncharacterized conserved protein, at 512,850 to 515,031 11276

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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509,860 - +0.7
509,883 + -0.1
509,890 + +0.4
509,890 + +2.0
509,893 - +0.1
509,905 + +0.6
509,906 - +0.1
510,070 + -0.5
510,133 + +0.4
510,141 - +1.0
510,141 - +0.3
510,144 + -0.4
510,151 + +0.6
510,157 + +0.1
510,172 + +0.0
510,188 - +0.0
510,194 - +0.7
510,204 - +0.2
510,210 + +0.5
510,223 + +0.4
510,240 + -0.7
510,319 - +0.6
510,334 + +0.3
510,342 + +0.7
510,383 - +0.7
510,395 + -1.2
510,497 - +0.1
511,249 - 11275 mRNA_2907 0.39 +0.5
511,360 - 11275 mRNA_2907 0.44 -0.9
511,686 - 11275 mRNA_2907 0.57 +1.0
511,708 - 11275 mRNA_2907 0.58 +2.7
511,795 + 11275 mRNA_2907 0.61 +0.6
512,080 - 11275 mRNA_2907 0.73 -0.4
512,083 + 11275 mRNA_2907 0.73 +1.3
512,122 + 11275 mRNA_2907 0.75 +0.5
512,243 - 11275 mRNA_2907 0.80 +0.5
512,542 - -0.6
512,692 + +0.0
512,702 - -0.0
512,941 + -0.7
513,269 - 11276 mRNA_2908 0.19 +1.7
513,336 - 11276 mRNA_2908 0.22 +0.2
513,362 - 11276 mRNA_2908 0.23 -0.3
513,382 + 11276 mRNA_2908 0.24 -0.0
513,497 + 11276 mRNA_2908 0.30 +0.4
513,531 + 11276 mRNA_2908 0.31 +0.1
513,569 + 11276 mRNA_2908 0.33 +0.3
513,571 - 11276 mRNA_2908 0.33 +0.4
513,601 - 11276 mRNA_2908 0.34 +1.0
513,617 - 11276 mRNA_2908 0.35 -0.0
513,617 - 11276 mRNA_2908 0.35 +1.1
513,624 + 11276 mRNA_2908 0.35 -0.5
513,629 - 11276 mRNA_2908 0.36 +0.3
513,631 + 11276 mRNA_2908 0.36 +0.2
513,640 + 11276 mRNA_2908 0.36 +0.4
513,643 - 11276 mRNA_2908 0.36 -0.1
513,680 + 11276 mRNA_2908 0.38 +0.6
513,683 - 11276 mRNA_2908 0.38 +0.8

Or see this region's nucleotide sequence