Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2920

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11287 and 11288 are separated by 292 nucleotides11288 and 11289 are separated by 408 nucleotides mRNA_2919: 11287 - BLAST Protein FAM186A [Mus musculus] [Rhizoctonia solani], at 555,842 to 558,142 11287 mRNA_2920: 11288 - KOG2234 Predicted UDP-galactose transporter, at 558,435 to 560,436 11288 mRNA_2921: 11289 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 560,845 to 562,189 11289

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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557,556 - 11287 mRNA_2919 0.74 +1.3
558,003 + -0.0
558,148 + +0.9
558,196 + +0.4
558,299 + +0.3
558,475 - +0.2
558,871 - 11288 mRNA_2920 0.22 +0.6
558,898 + 11288 mRNA_2920 0.23 +0.0
558,977 - 11288 mRNA_2920 0.27 +0.9
558,984 - 11288 mRNA_2920 0.27 -0.2
559,010 + 11288 mRNA_2920 0.29 +0.8
559,176 - 11288 mRNA_2920 0.37 +0.0
559,476 + 11288 mRNA_2920 0.52 +1.1
559,895 + 11288 mRNA_2920 0.73 +1.2
560,191 + 11288 mRNA_2920 0.88 +0.0
560,339 - +0.5
560,623 - +0.5
560,628 - +1.2
560,657 - -0.3
560,965 + +0.2
560,990 + 11289 mRNA_2921 0.11 -0.8
561,205 + 11289 mRNA_2921 0.27 -0.3
561,241 + 11289 mRNA_2921 0.29 -0.6
561,330 - 11289 mRNA_2921 0.36 +0.4
561,395 + 11289 mRNA_2921 0.41 +1.5

Or see this region's nucleotide sequence