Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2960

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11327 and 11328 are separated by 411 nucleotides11328 and 11329 are separated by 990 nucleotides mRNA_2959: 11327 - KOG4554 Protein involved in inorganic phosphate transport, at 651,549 to 652,747 11327 mRNA_2960: 11328 - KOG2617 Citrate synthase, at 653,159 to 654,002 11328 mRNA_2961: 11329 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 654,993 to 657,914 11329

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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652,746 - -0.7
653,066 - +1.1
653,166 - +1.0
653,274 - 11328 mRNA_2960 0.14 +1.2
653,902 + 11328 mRNA_2960 0.88 +0.6
654,382 + +0.6
654,495 - +1.5
654,517 - +0.1
654,672 + -0.3
654,931 - +0.2
654,942 + +0.5

Or see this region's nucleotide sequence