Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2962

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11329 and 11330 are separated by 444 nucleotides11330 and 11331 are separated by 555 nucleotides mRNA_2961: 11329 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 654,993 to 657,914 11329 mRNA_2962: 11330 - KOG3841 TEF-1 and related transcription factor, TEAD family, at 658,359 to 659,860 11330 mRNA_2963: 11331 - K01647 CS, gltA citrate synthase, at 660,416 to 662,957 11331

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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657,402 - 11329 mRNA_2961 0.82 +0.8
657,470 - 11329 mRNA_2961 0.85 +0.5
657,599 + 11329 mRNA_2961 0.89 +0.5
657,740 - +0.8
657,876 + +0.1
657,889 + +0.8
657,890 + -0.3
658,044 + +0.0
658,120 + +0.4
658,129 - +0.8
658,174 - +0.3
658,175 + +0.8
658,193 - -0.2
658,294 + +1.1
658,297 - +0.6
658,344 - +0.5
658,506 - +0.7
658,513 - 11330 mRNA_2962 0.10 -0.4
658,587 - 11330 mRNA_2962 0.15 +0.1
658,595 + 11330 mRNA_2962 0.16 -0.3
658,645 + 11330 mRNA_2962 0.19 -0.1
658,791 - 11330 mRNA_2962 0.29 +0.8
658,886 + 11330 mRNA_2962 0.35 -1.1
658,940 - 11330 mRNA_2962 0.39 +1.3
659,072 - 11330 mRNA_2962 0.47 +0.2
659,084 - 11330 mRNA_2962 0.48 +0.5
659,206 - 11330 mRNA_2962 0.56 -0.1
659,958 + +1.0
660,064 + +0.4
660,068 - +0.1
660,102 - -0.1
660,210 - +1.6

Or see this region's nucleotide sequence