Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2987

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11354 and 11355 are separated by 100 nucleotides11355 and 11356 are separated by 246 nucleotides mRNA_2986: 11354 - K19176 FAAH2 fatty acid amide hydrolase 2, at 14,214 to 16,255 11354 mRNA_2987: 11355 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 16,356 to 17,605 11355 mRNA_2988: 11356 - KOG1212 Amidases, at 17,852 to 19,907 11356

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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15,407 + 11354 mRNA_2986 0.58 +0.9
15,452 + 11354 mRNA_2986 0.61 -0.1
15,471 - 11354 mRNA_2986 0.62 +0.4
15,479 + 11354 mRNA_2986 0.62 +1.2
15,544 + 11354 mRNA_2986 0.65 +1.9
16,047 - 11354 mRNA_2986 0.90 -0.3
16,304 - +0.2
16,313 + +1.4
16,325 - +0.5
16,332 - +0.5
16,336 - -1.7
16,345 - +1.0
16,371 + +0.3
16,392 + +0.2
16,407 - +0.9
16,417 - +0.7
16,418 + +0.4
16,420 + +0.6
16,475 + +0.6
16,479 + -0.6
16,488 - 11355 mRNA_2987 0.11 +0.3
16,520 - 11355 mRNA_2987 0.13 +0.4
16,530 - 11355 mRNA_2987 0.14 +1.3
16,605 - 11355 mRNA_2987 0.20 +0.2
16,617 + 11355 mRNA_2987 0.21 +1.4
16,627 - 11355 mRNA_2987 0.22 +0.1
16,630 - 11355 mRNA_2987 0.22 -0.2
16,631 - 11355 mRNA_2987 0.22 +2.3
16,647 + 11355 mRNA_2987 0.23 +0.3
16,650 - 11355 mRNA_2987 0.24 +0.9
16,778 + 11355 mRNA_2987 0.34 -0.4
16,798 + 11355 mRNA_2987 0.35 -0.3
16,807 - 11355 mRNA_2987 0.36 -1.5
16,809 + 11355 mRNA_2987 0.36 +0.2
16,814 + 11355 mRNA_2987 0.37 +0.8
16,822 + 11355 mRNA_2987 0.37 +1.1
16,877 + 11355 mRNA_2987 0.42 -0.9
17,017 - 11355 mRNA_2987 0.53 +0.2
17,053 - 11355 mRNA_2987 0.56 +0.6
17,097 + 11355 mRNA_2987 0.59 +0.7
17,100 - 11355 mRNA_2987 0.60 +0.9
17,241 + 11355 mRNA_2987 0.71 +0.2
17,358 - 11355 mRNA_2987 0.80 +0.8
17,483 - +0.2
17,491 - +0.8
17,515 - +1.0
17,546 + +0.4
17,562 + +0.1
17,639 - +0.4
17,641 - +0.2
17,667 + +0.3
17,694 - -0.0
17,832 + +0.8
17,919 - +0.4
17,937 + -0.0
18,027 - +0.2
18,091 + 11356 mRNA_2988 0.12 +0.4
18,144 + 11356 mRNA_2988 0.14 +0.3
18,200 - 11356 mRNA_2988 0.17 +1.0
18,227 + 11356 mRNA_2988 0.18 +1.5
18,253 - 11356 mRNA_2988 0.20 +0.1
18,260 - 11356 mRNA_2988 0.20 +1.1
18,415 - 11356 mRNA_2988 0.27 -0.6
18,576 - 11356 mRNA_2988 0.35 -0.9

Or see this region's nucleotide sequence