Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2992

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11359 and 11360 are separated by 593 nucleotides mRNA_2991: 11359 - SUPERFAMILY--SSF50685, at 25,748 to 27,268 11359 mRNA_2992: 11360 - Hypothetical Protein, at 27,862 to 28,502 11360

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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26,899 + 11359 mRNA_2991 0.76 -0.1
26,941 - 11359 mRNA_2991 0.78 -0.3
27,032 + 11359 mRNA_2991 0.84 +0.3
27,036 + 11359 mRNA_2991 0.85 +0.7
27,163 + +1.8
27,297 - +0.9
27,305 - +0.5
27,327 + +0.8
27,453 + +0.8
27,474 + +0.6
27,485 + +0.2
27,500 + +0.3
27,622 - +0.8
27,774 + -0.1
27,796 + +1.2
28,285 - 11360 mRNA_2992 0.66 -0.3
28,331 - 11360 mRNA_2992 0.73 +0.7
28,384 - 11360 mRNA_2992 0.81 +0.7
28,393 + 11360 mRNA_2992 0.83 +0.9
28,456 - -0.1
28,493 + +1.5
28,571 - +1.0
28,633 - +0.6
28,729 - -0.8
28,820 + +1.1
28,820 + -0.8
28,895 - -0.3
28,907 - +0.0
28,952 + +1.2
28,952 + +0.3
28,981 - +0.2
29,069 + -0.2
29,212 + +0.5
29,317 + +0.2
29,361 - +1.1
29,390 - +0.5
29,393 + +0.0
29,449 + +0.8
29,479 - -0.3
29,490 + -0.5

Or see this region's nucleotide sequence