Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3059

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11427 and 11428 are separated by 499 nucleotides mRNA_3059: 11427 - Hypothetical Protein, at 217,589 to 219,191 11427 mRNA_3060: 11428 - K13115 CCDC130 coiled-coil domain-containing protein 130, at 219,691 to 221,317 11428

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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216,674 + -0.0
216,742 + +0.3
216,837 - +2.2
216,865 - +0.1
216,868 - +0.0
216,879 + +0.1
216,882 + +0.8
216,884 - -0.4
217,004 + +0.8
217,009 - +0.8
217,011 - +0.6
217,029 - +0.1
217,032 + +1.2
217,035 - -0.8
217,037 + +0.4
217,038 + -0.1
217,045 - +0.6
217,152 - +1.7
217,173 + +0.3
217,193 + +0.9
217,252 - +0.4
217,317 + +1.5
217,461 - +0.9
217,464 + +0.1
217,470 - -0.1
217,470 - +0.4
217,475 + -0.0
217,636 + +0.9
217,909 + 11427 mRNA_3059 0.20 -0.2
217,927 - 11427 mRNA_3059 0.21 +0.0
218,062 + 11427 mRNA_3059 0.30 -0.0
218,066 + 11427 mRNA_3059 0.30 +0.6
218,147 - 11427 mRNA_3059 0.35 -1.2
218,168 + 11427 mRNA_3059 0.36 +1.0
218,203 - 11427 mRNA_3059 0.38 +0.7
218,447 - 11427 mRNA_3059 0.54 +0.6
218,618 + 11427 mRNA_3059 0.64 -0.9
218,635 - 11427 mRNA_3059 0.65 -0.0
218,649 + 11427 mRNA_3059 0.66 +0.3
218,747 + 11427 mRNA_3059 0.72 +0.6
218,798 - 11427 mRNA_3059 0.75 -0.7
218,892 - 11427 mRNA_3059 0.81 -1.3
218,996 + 11427 mRNA_3059 0.88 -0.5
219,037 + +0.2
219,182 - +0.1
219,183 - -0.3
219,309 - +0.3
219,330 - -0.4
219,331 - -0.1
219,346 - +0.6
219,346 - -1.0
219,347 + +1.4
219,451 - -0.0
219,453 + +1.1
219,467 - +1.1
219,484 - -0.3
219,501 - +0.2
219,513 + -2.1
219,624 - -0.3
219,630 + +0.2
219,630 + +0.3
219,637 + +1.0
219,639 + -0.2
219,753 - +0.4
219,759 - +0.0
219,763 + -0.1
219,765 - -0.1
219,768 - +0.7
219,773 + +0.3
219,780 - +0.5
219,902 - 11428 mRNA_3060 0.13 +0.2
219,902 - 11428 mRNA_3060 0.13 +1.2
219,903 + 11428 mRNA_3060 0.13 +0.3
219,908 + 11428 mRNA_3060 0.13 -1.2
219,931 + 11428 mRNA_3060 0.15 +0.4
220,038 - 11428 mRNA_3060 0.21 +0.7
220,082 + 11428 mRNA_3060 0.24 +0.4

Or see this region's nucleotide sequence