Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3083

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11451 and 11452 are separated by 123 nucleotides mRNA_3083: 11451 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SUPERFAMILY--SSF57959, at 281,026 to 282,865 11451 mRNA_3084: 11452 - Hypothetical Protein, at 282,989 to 283,312 11452

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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280,042 - +0.4
280,045 + +0.3
280,046 + +0.3
280,053 + -0.3
280,122 + -0.5
280,142 + -1.5
280,143 - -0.1
280,146 + +1.5
280,149 - +0.6
280,149 - +1.0
280,160 + +0.8
280,161 - +0.5
280,163 - +0.0
280,166 - +0.8
280,166 - +1.9
280,169 - +0.0
280,173 + +0.5
280,175 + -0.4
280,178 - +0.9
280,179 - -0.7
280,180 + +0.4
280,182 - +1.5
280,185 + -0.2
280,188 + +0.2
280,190 - -0.7
280,193 - +0.3
280,207 - +0.8
280,213 - +0.1
280,330 - +1.6
280,331 + -1.3
280,344 - +0.6
280,357 + +0.2
280,419 + +0.2
280,462 - -0.6
280,463 - -0.0
280,481 - -0.5
280,495 + +0.6
280,496 + -0.3
280,509 + -0.2
280,624 - +0.2
280,632 + +0.2
280,638 - -0.0
280,668 + +0.6
280,749 + -0.8
280,769 + +1.4
280,795 + -0.8
280,834 + +0.7
280,955 - +0.0
280,959 - +0.2
280,964 + +1.3
281,058 + +1.6
281,065 - +0.3
281,077 - +1.2
281,204 + +0.7
281,356 + 11451 mRNA_3083 0.18 -0.5
281,372 + 11451 mRNA_3083 0.19 -0.4
281,442 - 11451 mRNA_3083 0.23 +0.3
281,490 + 11451 mRNA_3083 0.25 +0.2
281,522 - 11451 mRNA_3083 0.27 +0.7
281,564 - 11451 mRNA_3083 0.29 -0.3
281,628 - 11451 mRNA_3083 0.33 +1.7
281,634 - 11451 mRNA_3083 0.33 +0.5
281,659 + 11451 mRNA_3083 0.34 -0.3
281,662 + 11451 mRNA_3083 0.35 +0.5
281,690 + 11451 mRNA_3083 0.36 +0.2
281,833 - 11451 mRNA_3083 0.44 +0.7
281,850 - 11451 mRNA_3083 0.45 +0.7
281,880 - 11451 mRNA_3083 0.46 +0.7
281,883 - 11451 mRNA_3083 0.47 +0.2
281,900 - 11451 mRNA_3083 0.47 +0.8
281,907 - 11451 mRNA_3083 0.48 +0.1
281,919 + 11451 mRNA_3083 0.49 +0.6
281,919 - 11451 mRNA_3083 0.49 +0.5
281,921 + 11451 mRNA_3083 0.49 +0.3
281,940 + 11451 mRNA_3083 0.50 -0.2
281,970 - 11451 mRNA_3083 0.51 +0.7
281,987 - 11451 mRNA_3083 0.52 +0.2
282,014 + 11451 mRNA_3083 0.54 -0.6
282,020 - 11451 mRNA_3083 0.54 +0.5
282,021 - 11451 mRNA_3083 0.54 -0.2
282,021 + 11451 mRNA_3083 0.54 +0.1
282,024 - 11451 mRNA_3083 0.54 +1.0
282,026 - 11451 mRNA_3083 0.54 +1.3
282,026 + 11451 mRNA_3083 0.54 +1.6
282,035 - 11451 mRNA_3083 0.55 -1.1
282,037 - 11451 mRNA_3083 0.55 +0.5
282,041 - 11451 mRNA_3083 0.55 +0.6
282,042 + 11451 mRNA_3083 0.55 -0.2
282,045 - 11451 mRNA_3083 0.55 +0.2
282,050 + 11451 mRNA_3083 0.56 +1.2
282,059 + 11451 mRNA_3083 0.56 -0.1
282,071 - 11451 mRNA_3083 0.57 -0.4
282,072 - 11451 mRNA_3083 0.57 +0.6
282,079 - 11451 mRNA_3083 0.57 +1.0
282,082 + 11451 mRNA_3083 0.57 -0.3
282,085 - 11451 mRNA_3083 0.58 +1.2
282,087 - 11451 mRNA_3083 0.58 -0.0
282,087 + 11451 mRNA_3083 0.58 +0.6
282,088 + 11451 mRNA_3083 0.58 +0.4
282,089 - 11451 mRNA_3083 0.58 +0.4
282,093 + 11451 mRNA_3083 0.58 -0.6
282,093 + 11451 mRNA_3083 0.58 +0.5
282,100 - 11451 mRNA_3083 0.58 -0.2
282,101 + 11451 mRNA_3083 0.58 -0.3
282,106 + 11451 mRNA_3083 0.59 -0.1
282,109 + 11451 mRNA_3083 0.59 -0.2
282,117 + 11451 mRNA_3083 0.59 +0.1
282,132 - 11451 mRNA_3083 0.60 -0.4
282,136 + 11451 mRNA_3083 0.60 -1.1
282,136 + 11451 mRNA_3083 0.60 +0.9
282,137 - 11451 mRNA_3083 0.60 +1.1
282,142 + 11451 mRNA_3083 0.61 +0.3
282,143 + 11451 mRNA_3083 0.61 +0.9
282,145 - 11451 mRNA_3083 0.61 +0.3
282,168 - 11451 mRNA_3083 0.62 -0.2
282,169 - 11451 mRNA_3083 0.62 +0.4
282,187 - 11451 mRNA_3083 0.63 +0.2
282,201 - 11451 mRNA_3083 0.64 -0.4
282,209 - 11451 mRNA_3083 0.64 +0.5
282,233 - 11451 mRNA_3083 0.66 +0.1
282,241 + 11451 mRNA_3083 0.66 +1.0
282,251 - 11451 mRNA_3083 0.67 -0.5
282,260 - 11451 mRNA_3083 0.67 +0.4
282,338 - 11451 mRNA_3083 0.71 +0.3
282,338 + 11451 mRNA_3083 0.71 -0.7
282,340 + 11451 mRNA_3083 0.71 -0.4
282,359 + 11451 mRNA_3083 0.72 +0.3
282,367 - 11451 mRNA_3083 0.73 -0.3
282,367 - 11451 mRNA_3083 0.73 +0.9
282,379 - 11451 mRNA_3083 0.74 +0.3
282,379 - 11451 mRNA_3083 0.74 +0.3
282,385 + 11451 mRNA_3083 0.74 +0.3
282,392 + 11451 mRNA_3083 0.74 -0.1
282,411 + 11451 mRNA_3083 0.75 +1.5
282,412 + 11451 mRNA_3083 0.75 -0.3
282,412 + 11451 mRNA_3083 0.75 +0.4
282,418 + 11451 mRNA_3083 0.76 +0.0
282,419 + 11451 mRNA_3083 0.76 +0.6
282,424 + 11451 mRNA_3083 0.76 -0.5
282,424 + 11451 mRNA_3083 0.76 +0.9
282,429 - 11451 mRNA_3083 0.76 -1.1
282,452 + 11451 mRNA_3083 0.78 +0.5
282,456 + 11451 mRNA_3083 0.78 +1.2
282,457 + 11451 mRNA_3083 0.78 +0.4
282,469 + 11451 mRNA_3083 0.78 +0.6
282,482 + 11451 mRNA_3083 0.79 -0.2
282,486 - 11451 mRNA_3083 0.79 +0.0
282,540 - 11451 mRNA_3083 0.82 -0.7
282,545 - 11451 mRNA_3083 0.83 -0.2
282,552 + 11451 mRNA_3083 0.83 +0.4
282,601 + 11451 mRNA_3083 0.86 +0.8
282,616 - 11451 mRNA_3083 0.86 +0.1
282,634 + 11451 mRNA_3083 0.87 +0.3
282,642 - 11451 mRNA_3083 0.88 -0.3
282,681 - 11451 mRNA_3083 0.90 +0.1
282,694 + +0.4
282,707 - -0.3
282,709 - +0.2
282,709 + +0.5
282,712 - +0.9
282,713 + +0.5
282,718 - +0.4
282,733 - -0.0
282,758 + +0.2
282,761 + -0.3
282,779 + +0.2
282,784 + +0.1
282,861 - -0.1
282,864 - +1.6
282,866 - +0.6
282,906 - -0.3
282,909 + +0.5
282,947 - +0.1
282,953 + -0.3
282,962 - +1.3
282,968 + +0.2
282,995 + +0.5
283,012 - -1.0
283,022 + 11452 mRNA_3084 0.10 -0.3
283,043 - 11452 mRNA_3084 0.17 +0.7
283,073 + 11452 mRNA_3084 0.26 +0.2
283,099 + 11452 mRNA_3084 0.34 +0.8
283,099 + 11452 mRNA_3084 0.34 +2.7
283,102 - 11452 mRNA_3084 0.35 -0.4
283,114 + 11452 mRNA_3084 0.39 -1.6
283,149 + 11452 mRNA_3084 0.49 +0.1
283,241 - 11452 mRNA_3084 0.78 -0.3
283,251 - 11452 mRNA_3084 0.81 +0.3
283,252 + 11452 mRNA_3084 0.81 +0.4
283,271 + 11452 mRNA_3084 0.87 -0.0
283,272 + 11452 mRNA_3084 0.87 +0.4
283,419 - -0.6
283,531 + +0.6
283,534 + +0.3
283,545 + +0.9
283,545 + -0.8
283,547 - -0.8
283,563 + +0.6
283,580 + +0.6
283,710 + +0.4
283,826 - +0.5
283,827 + +0.8
283,844 + +0.6
283,854 + +0.2
283,858 + +0.3
283,858 + +0.5
283,860 - +0.5
283,861 + -0.1
283,863 - -0.9
283,864 + -0.4
283,865 + +0.0

Or see this region's nucleotide sequence