Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3154

Experiment: 40 hrs Median Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11521 and 11522 are separated by 295 nucleotides mRNA_3153: 11521 - BLAST serine proline rich protein [Moniliophthora rorer..., at 439,382 to 440,661 11521 mRNA_3154: 11522 - K14831 MAK16 protein MAK16, at 440,957 to 442,475 11522

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
remove
440,096 + 11521 mRNA_3153 0.56 +0.9
440,332 - 11521 mRNA_3153 0.74 -0.6
440,340 + 11521 mRNA_3153 0.75 +0.7
440,495 - 11521 mRNA_3153 0.87 -0.1
440,508 + 11521 mRNA_3153 0.88 +0.0
440,639 - -0.5
440,692 + +1.0
440,928 - +0.2
440,945 - +0.8
440,973 - -0.4
441,230 - 11522 mRNA_3154 0.18 -0.7
441,364 + 11522 mRNA_3154 0.27 +1.5
441,385 + 11522 mRNA_3154 0.28 +0.5
441,487 - 11522 mRNA_3154 0.35 +0.5
441,546 - 11522 mRNA_3154 0.39 +0.1
441,926 - 11522 mRNA_3154 0.64 -0.5
441,980 + 11522 mRNA_3154 0.67 +0.5
442,193 - 11522 mRNA_3154 0.81 +0.4
442,202 + 11522 mRNA_3154 0.82 -0.1
442,229 + 11522 mRNA_3154 0.84 -0.2
442,370 - -0.4
442,376 - +0.3
442,521 - +0.9
442,527 + +0.6
442,528 + +1.5
442,543 + -0.0
442,567 + -0.0
442,665 - +0.5
442,665 - -0.0
442,666 + +0.5
442,667 + +0.5
442,667 + -0.1
442,670 + +0.0
442,671 - +0.1
442,674 - -0.6
442,676 - +0.3
442,681 + -0.1
442,689 - +0.7
442,692 - +0.0
442,693 + +1.6
442,695 + +0.1
442,711 + -0.8
442,729 + +0.2
442,807 + +0.5
442,808 + +0.9
442,843 - +0.7
442,850 - -0.4
442,919 - +2.1
442,963 + +1.2
442,970 + +0.8
442,984 - +0.0
442,984 - +1.0
442,995 - -0.5
442,997 - +0.6
442,997 - -0.2
443,002 + -2.0
443,003 - -0.3
443,011 - +0.0
443,015 + +0.5
443,022 + -0.2
443,026 - -1.1
443,030 + +0.1
443,033 - +1.7
443,049 + -0.6
443,051 - +0.5
443,052 - +0.7
443,052 - +0.0
443,054 - +0.1
443,055 + +0.3
443,058 - -0.1
443,058 + -0.2
443,058 + -0.0
443,062 + -0.2
443,064 + +1.5
443,069 - -0.1
443,069 - +0.6
443,073 - +0.6
443,073 - +1.0
443,078 - +0.5
443,083 - +0.2
443,087 - +0.1
443,090 + +0.2
443,090 + -0.2
443,092 - +0.9
443,096 - +0.2
443,096 - +1.4
443,097 + -1.4
443,099 + +0.3
443,102 - +0.8
443,105 + +0.4
443,106 - -0.1
443,108 - +0.6
443,109 + +0.0
443,109 + +0.5
443,112 - +1.5
443,112 - +1.2
443,113 - +0.3
443,114 - +0.4
443,115 - -0.0
443,118 - +0.4
443,120 - +0.5
443,121 + +0.3
443,123 - +1.3
443,125 - +0.4
443,126 - +0.6
443,128 - +0.2
443,129 - +0.6
443,130 + -0.2
443,131 + +0.3
443,135 + +0.6
443,135 - +0.0
443,135 + +0.3
443,136 + +0.6
443,136 - +0.0
443,136 + +0.6
443,138 + +0.1
443,138 - +0.1
443,139 + -1.3
443,143 - +0.6
443,143 + -0.2
443,145 - -1.6
443,150 + +1.0
443,166 + -0.0
443,195 - +2.2
443,200 + -0.6
443,201 + +0.2
443,203 - +1.3
443,206 - +0.0
443,211 - -0.8
443,211 - +0.6
443,211 + +0.6
443,214 + -0.2
443,215 - +1.0
443,220 - +1.0
443,222 - +0.5
443,222 + +0.1
443,222 - +0.2
443,222 + +0.1
443,223 - +1.1
443,228 - +0.3
443,233 - +2.0
443,236 - -0.3
443,236 - +1.1
443,238 + +0.6
443,238 - +0.7
443,240 + +0.9
443,241 + +0.1
443,242 + +0.0
443,245 - -0.1
443,245 - +0.0
443,246 + +0.4
443,247 + -0.2
443,248 + +0.5
443,249 + -0.1
443,251 + +0.9
443,253 + +0.3
443,257 + +0.1
443,257 + +1.4
443,257 + -0.2
443,262 - +0.3
443,264 - +0.7
443,264 + +0.9
443,266 - -0.4
443,268 + +0.8
443,268 + -0.0
443,273 + -1.1
443,282 - +0.9
443,283 + -0.5
443,289 + +0.5
443,297 + +0.3
443,300 - -0.6
443,300 - +0.9
443,367 - +0.8
443,379 + -0.3
443,397 + +1.0
443,408 + +0.4
443,409 + +0.0
443,411 - +0.2
443,414 + -0.1
443,415 - +0.9
443,416 + +0.2
443,416 - -0.7
443,418 + -0.8
443,420 - +0.3
443,420 - +0.3
443,424 - +1.3
443,428 - +1.4
443,430 - +0.2
443,430 - -0.4
443,430 + +0.5
443,436 + +0.2
443,436 + -0.2
443,439 + +0.2
443,470 + +0.0

Or see this region's nucleotide sequence