Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3169

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11537 and 11538 are separated by 647 nucleotides mRNA_3169: 11537 - Hypothetical Protein, at 529 to 1,526 11537 mRNA_3170: 11538 - Hypothetical Protein, at 2,174 to 3,237 11538

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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12 + +1.1
12 + +0.1
15 + +1.2
16 + -0.1
18 + -0.9
22 + -0.2
25 + -0.3
57 - +0.3
61 - +1.1
62 + -0.5
62 + +0.6
66 + -0.5
72 + +0.9
72 + -0.4
72 + -0.1
75 + -0.2
78 - -0.2
105 + +0.4
110 - +0.1
114 + +0.1
115 + -0.4
118 + -0.5
122 + -0.3
122 - -0.2
124 + +0.2
135 + +1.3
147 + -1.6
157 + +0.4
161 + +0.8
168 + -1.1
174 + -1.2
177 - +0.2
228 + -0.7
247 + +0.3
252 - +2.0
253 - +2.2
255 + +1.2
258 + -0.1
264 - +0.2
269 + +0.7
269 - -0.8
274 + +0.4
275 - -0.6
277 + -0.8
280 + +0.5
280 + +2.2
283 - +0.3
285 - -0.4
287 + -0.3
287 + +1.2
288 + +0.1
292 - -0.2
293 + -0.7
298 + +0.4
305 - +0.6
314 + +0.8
320 + -0.4
368 + +0.5
370 - -0.0
372 + -0.2
382 + +1.5
384 + +0.4
391 + +1.0
391 - +1.6
397 + -0.0
397 - -0.3
402 + +0.3
405 + +0.7
423 - -0.3
430 + -0.3
440 + +0.7
446 + -0.5
470 + -0.5
524 + +1.0
532 + +0.2
545 - +0.1
557 + -0.4
569 + +0.8
570 - -0.7
583 + +0.6
584 + -0.1
603 - +0.3
603 + -0.1
634 - 11537 mRNA_3169 0.11 +0.5
636 + 11537 mRNA_3169 0.11 +0.2
646 + 11537 mRNA_3169 0.12 +0.6
661 + 11537 mRNA_3169 0.13 +0.7
667 + 11537 mRNA_3169 0.14 +0.5
698 + 11537 mRNA_3169 0.17 +0.5
704 - 11537 mRNA_3169 0.18 +0.4
705 - 11537 mRNA_3169 0.18 +0.4
721 - 11537 mRNA_3169 0.19 -0.2
725 + 11537 mRNA_3169 0.20 +1.0
738 - 11537 mRNA_3169 0.21 +0.8
849 + 11537 mRNA_3169 0.32 -0.4
871 + 11537 mRNA_3169 0.34 -0.4
883 + 11537 mRNA_3169 0.35 +1.4
894 + 11537 mRNA_3169 0.37 +0.1
895 + 11537 mRNA_3169 0.37 +0.0
922 + 11537 mRNA_3169 0.39 +2.2
965 - 11537 mRNA_3169 0.44 -1.4
1,012 - 11537 mRNA_3169 0.48 +0.2
1,026 + 11537 mRNA_3169 0.50 -0.7
1,026 + 11537 mRNA_3169 0.50 +0.3
1,105 + 11537 mRNA_3169 0.58 +0.6
1,123 + 11537 mRNA_3169 0.60 +0.2
1,141 + 11537 mRNA_3169 0.61 +0.5
1,142 + 11537 mRNA_3169 0.61 +0.7
1,165 + 11537 mRNA_3169 0.64 -0.3
1,174 - 11537 mRNA_3169 0.65 +2.3
1,174 + 11537 mRNA_3169 0.65 -1.7
1,259 + 11537 mRNA_3169 0.73 +0.2
1,265 + 11537 mRNA_3169 0.74 +0.8
1,268 + 11537 mRNA_3169 0.74 +0.8
1,269 - 11537 mRNA_3169 0.74 +0.8
1,288 - 11537 mRNA_3169 0.76 -0.5
1,297 + 11537 mRNA_3169 0.77 -1.2
1,303 - 11537 mRNA_3169 0.78 -0.6
1,399 + 11537 mRNA_3169 0.87 +1.0
1,412 - 11537 mRNA_3169 0.88 +0.9
1,419 - 11537 mRNA_3169 0.89 +0.3
1,423 - 11537 mRNA_3169 0.90 +0.5
1,429 - +1.1
1,453 + +0.6
1,459 + -0.8
1,459 + -0.1
1,460 - +0.4
1,461 + +0.8
1,462 + +0.3
1,467 + +0.4
1,470 - +0.9
1,474 - -0.0
1,485 + +0.6
1,520 + +0.2
1,523 + +0.1
1,531 - +0.9
1,537 + +0.7
1,541 + +0.5
1,562 + +1.0
1,567 + +1.1
1,572 + +0.6
1,582 - -0.5
1,584 - +0.3
1,589 + +0.7
1,596 - +0.2
1,601 - -0.1
1,602 + -0.1
1,605 + -1.6
1,609 + -0.1
1,616 + +0.4
1,636 + -0.6
1,654 + -1.4
1,656 - +1.1
1,666 + +2.3
1,675 - +0.2
1,682 - -0.9
1,697 - +0.5
1,709 + -0.9
1,709 - -0.1
1,711 + +0.5
1,718 - -1.0
1,719 + +0.2
1,722 - +1.3
1,723 + +0.3
1,725 - +0.5
1,725 - +0.9
1,727 + -0.3
1,730 + +0.7
1,731 + +0.4
1,732 + -0.0
1,732 + +0.1
1,734 + +1.8
1,734 + +0.2
1,734 + +1.1
1,739 - +0.4
1,740 + +1.4
1,744 - +0.2
1,747 + +0.0
1,749 + +0.3
1,759 + +0.2
1,759 + +0.5
1,759 + +0.2
1,761 + -1.9
1,763 + -0.3
1,765 + -0.0
1,767 + -1.1
1,769 + +0.6
1,772 + +0.5
1,772 + -0.6
1,774 + +0.3
1,774 + -0.5
1,775 + -1.4
1,776 - -0.2
1,776 + +1.8
1,777 + +0.1
1,778 + +0.1
1,778 - -0.2
1,781 - +0.4
1,783 - -0.4
1,783 - -0.2
1,783 - +1.4
1,783 - -0.3
1,784 + -1.0
1,789 + -1.0
1,789 - +0.4
1,791 + -0.5
1,792 + -0.4
1,793 + -0.1
1,795 + +0.2
1,796 + +0.5
1,796 - +1.4
1,798 + -0.5
1,800 + -0.1
1,801 + +0.9
1,805 + +0.0
1,805 + +0.1
1,807 + -0.0
1,813 - -1.0
1,814 + +0.2
1,814 + +0.6
1,818 - +0.4
1,851 - +1.0
1,874 + +1.3
1,881 - +0.9
1,885 - -0.1
1,891 - +0.8
1,896 - +0.2
1,912 + -0.2
1,912 + +0.3
1,914 - +0.5
1,916 - -0.5
1,917 - -0.5
1,919 + +0.7
1,922 - -0.0
1,923 - +1.3
1,934 - +2.4
1,935 + +0.0
1,938 - +0.1
1,938 - +0.3
1,940 - -0.4
1,941 + +1.8
1,941 + +0.8
1,942 + +1.0
1,943 - +0.6
1,944 + -0.0
1,944 - -0.5
1,945 - +0.2
1,945 + +0.3
1,946 - +0.2
1,947 + -0.1
1,960 - +0.3
1,968 + -0.1
1,980 + +1.4
2,015 + +1.6
2,067 - -1.2
2,081 - +0.7
2,091 + +1.1
2,220 + +0.0
2,229 - -0.5
2,235 - -0.4
2,237 - +0.1
2,242 + +0.7
2,242 - +0.3
2,245 - -0.2
2,248 - -0.2
2,251 + +0.0
2,254 - -0.0
2,261 + +0.7
2,262 - +1.4
2,266 + -0.3
2,268 + +1.7
2,400 + 11538 mRNA_3170 0.21 +0.1
2,401 - 11538 mRNA_3170 0.21 +2.1
2,404 + 11538 mRNA_3170 0.22 +2.4
2,414 + 11538 mRNA_3170 0.23 +0.1
2,420 - 11538 mRNA_3170 0.23 +0.7
2,439 + 11538 mRNA_3170 0.25 +0.7
2,446 + 11538 mRNA_3170 0.26 -1.6
2,470 - 11538 mRNA_3170 0.28 +2.3
2,516 - 11538 mRNA_3170 0.32 +0.2

Or see this region's nucleotide sequence